View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_low_66 (Length: 315)

Name: NF2324_low_66
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_low_66
NF2324_low_66
[»] chr1 (6 HSPs)
chr1 (19-286)||(1640598-1640867)
chr1 (241-277)||(1640570-1640606)
chr1 (281-315)||(15161583-15161617)
chr1 (269-315)||(31797046-31797092)
chr1 (283-315)||(922448-922480)
chr1 (283-315)||(23356689-23356721)
[»] chr5 (7 HSPs)
chr5 (284-315)||(26036501-26036532)
chr5 (281-315)||(35306987-35307021)
chr5 (282-315)||(8986895-8986928)
chr5 (283-315)||(3223569-3223601)
chr5 (283-315)||(16521150-16521182)
chr5 (283-315)||(16666858-16666890)
chr5 (283-315)||(34082386-34082418)
[»] chr7 (9 HSPs)
chr7 (281-315)||(11900044-11900078)
chr7 (282-315)||(27512797-27512830)
chr7 (282-315)||(34533498-34533531)
chr7 (283-315)||(3235401-3235433)
chr7 (283-315)||(21782599-21782631)
chr7 (283-315)||(23909891-23909923)
chr7 (283-315)||(26612338-26612370)
chr7 (283-315)||(35437499-35437531)
chr7 (283-315)||(43632337-43632369)
[»] chr4 (3 HSPs)
chr4 (281-315)||(5344264-5344298)
chr4 (282-315)||(6386726-6386759)
chr4 (283-315)||(12640816-12640848)
[»] scaffold0122 (1 HSPs)
scaffold0122 (278-315)||(29641-29678)
[»] chr6 (3 HSPs)
chr6 (282-315)||(15272993-15273026)
chr6 (283-315)||(2565364-2565396)
chr6 (283-315)||(23585263-23585295)
[»] chr3 (5 HSPs)
chr3 (274-315)||(8313936-8313977)
chr3 (283-315)||(26494681-26494713)
chr3 (283-315)||(27766514-27766546)
chr3 (283-315)||(41223509-41223541)
chr3 (283-315)||(47530625-47530657)
[»] chr8 (2 HSPs)
chr8 (283-315)||(17943354-17943386)
chr8 (283-315)||(37639503-37639535)
[»] chr2 (2 HSPs)
chr2 (283-315)||(25888176-25888208)
chr2 (283-315)||(40445838-40445870)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 1640867 - 1640598
Alignment:
Q  19 gtatttatgcatttgagtttacctgcagaagctggttggtaacttactatggcgttttgattgagacttaattagcaaaaaccgtaatctacgttccaat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1640867 gtatttatgcatttgagtttacccgcagaagctggttggtaacttactatggcgttttgattgagacttaattagcaaaaaccgtaatctacgttccaat 1640768  T
Q  119 taccgtataactcacctgaactagtttagcatctctatgg-tattagacaaatgacaagctac-aaaaaagttagtaactagtattttgaattattggga 216  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1640767 taccgtataactcacctgaactagtttagcatctctatggttattagacaaatgacaagctacaaaaaaagttagtaactagtattttgaattattggga 1640668  T
Q  217 agtatacataactcttttaatcatttgattaaataatcaaactgtcacatgtatgaatgaattgattaaa 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1640667 agtatacataactcttttaatcatttgattaaataattaaactgtcacatgtatgaatgaattgattaaa 1640598  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 1640606 - 1640570
Alignment:
Q  241 ttgattaaataatcaaactgtcacatgtatgaatgaa 277  Q
    ||||||||||||||||| |||||||||||||||||||    
T  1640606 ttgattaaataatcaaattgtcacatgtatgaatgaa 1640570  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 15161617 - 15161583
Alignment:
Q  281 attaaaggctaaattgcacttttggacccctatct 315  Q
    |||||||||| ||||||||||||||||||||||||    
T  15161617 attaaaggcttaattgcacttttggacccctatct 15161583  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 31797046 - 31797092
Alignment:
Q  269 atgaatgaattgattaaaggctaaattgcacttttggacccctatct 315  Q
    |||||||||| | ||| ||||| ||||||||||||||||||||||||    
T  31797046 atgaatgaataggttataggcttaattgcacttttggacccctatct 31797092  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 922480 - 922448
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  922480 taaaggcttaattgcacttttggacccctatct 922448  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 23356689 - 23356721
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  23356689 taaaggcttaattgcacttttggacccctatct 23356721  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 26036532 - 26036501
Alignment:
Q  284 aaaggctaaattgcacttttggacccctatct 315  Q
    ||||||||||||||||||||||||||||||||    
T  26036532 aaaggctaaattgcacttttggacccctatct 26036501  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Complemental strand, 35307021 - 35306987
Alignment:
Q  281 attaaaggctaaattgcacttttggacccctatct 315  Q
    |||||||||| ||||||||||||||||||||||||    
T  35307021 attaaaggcttaattgcacttttggacccctatct 35306987  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 8986928 - 8986895
Alignment:
Q  282 ttaaaggctaaattgcacttttggacccctatct 315  Q
    ||||||||| ||||||||||||||||||||||||    
T  8986928 ttaaaggcttaattgcacttttggacccctatct 8986895  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 3223601 - 3223569
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  3223601 taaaggcttaattgcacttttggacccctatct 3223569  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 16521150 - 16521182
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  16521150 taaaggcttaattgcacttttggacccctatct 16521182  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 16666890 - 16666858
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  16666890 taaaggcttaattgcacttttggacccctatct 16666858  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 34082418 - 34082386
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  34082418 taaaggcttaattgcacttttggacccctatct 34082386  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 11900044 - 11900078
Alignment:
Q  281 attaaaggctaaattgcacttttggacccctatct 315  Q
    |||||||||| ||||||||||||||||||||||||    
T  11900044 attaaaggcttaattgcacttttggacccctatct 11900078  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 27512797 - 27512830
Alignment:
Q  282 ttaaaggctaaattgcacttttggacccctatct 315  Q
    ||||||||| ||||||||||||||||||||||||    
T  27512797 ttaaaggcttaattgcacttttggacccctatct 27512830  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Complemental strand, 34533531 - 34533498
Alignment:
Q  282 ttaaaggctaaattgcacttttggacccctatct 315  Q
    ||||||||| ||||||||||||||||||||||||    
T  34533531 ttaaaggcttaattgcacttttggacccctatct 34533498  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 3235433 - 3235401
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  3235433 taaaggcttaattgcacttttggacccctatct 3235401  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 21782599 - 21782631
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  21782599 taaaggcttaattgcacttttggacccctatct 21782631  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 23909891 - 23909923
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  23909891 taaaggcttaattgcacttttggacccctatct 23909923  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 26612338 - 26612370
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  26612338 taaaggcttaattgcacttttggacccctatct 26612370  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 35437531 - 35437499
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  35437531 taaaggcttaattgcacttttggacccctatct 35437499  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 43632337 - 43632369
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  43632337 taaaggcttaattgcacttttggacccctatct 43632369  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 5344264 - 5344298
Alignment:
Q  281 attaaaggctaaattgcacttttggacccctatct 315  Q
    |||||||||| ||||||||||||||||||||||||    
T  5344264 attaaaggcttaattgcacttttggacccctatct 5344298  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 6386726 - 6386759
Alignment:
Q  282 ttaaaggctaaattgcacttttggacccctatct 315  Q
    ||||||||| ||||||||||||||||||||||||    
T  6386726 ttaaaggcttaattgcacttttggacccctatct 6386759  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 12640816 - 12640848
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  12640816 taaaggcttaattgcacttttggacccctatct 12640848  T

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Target: scaffold0122 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 29641 - 29678
Alignment:
Q  278 ttgattaaaggctaaattgcacttttggacccctatct 315  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  29641 ttgatttaaggcttaattgcacttttggacccctatct 29678  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 15272993 - 15273026
Alignment:
Q  282 ttaaaggctaaattgcacttttggacccctatct 315  Q
    ||||||||| ||||||||||||||||||||||||    
T  15272993 ttaaaggcttaattgcacttttggacccctatct 15273026  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 2565396 - 2565364
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  2565396 taaaggcttaattgcacttttggacccctatct 2565364  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 23585295 - 23585263
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  23585295 taaaggcttaattgcacttttggacccctatct 23585263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 8313936 - 8313977
Alignment:
Q  274 tgaattgattaaaggctaaattgcacttttggacccctatct 315  Q
    |||||| |||| ||||| ||||||||||||||||||||||||    
T  8313936 tgaatttattataggcttaattgcacttttggacccctatct 8313977  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 26494681 - 26494713
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  26494681 taaaggcttaattgcacttttggacccctatct 26494713  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 27766514 - 27766546
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  27766514 taaaggcttaattgcacttttggacccctatct 27766546  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 41223509 - 41223541
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  41223509 taaaggcttaattgcacttttggacccctatct 41223541  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 47530657 - 47530625
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  47530657 taaaggcttaattgcacttttggacccctatct 47530625  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 17943354 - 17943386
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  17943354 taaaggcttaattgcacttttggacccctatct 17943386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 37639503 - 37639535
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  37639503 taaaggcttaattgcacttttggacccctatct 37639535  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 25888208 - 25888176
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  25888208 taaaggcttaattgcacttttggacccctatct 25888176  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 315
Target Start/End: Complemental strand, 40445870 - 40445838
Alignment:
Q  283 taaaggctaaattgcacttttggacccctatct 315  Q
    |||||||| ||||||||||||||||||||||||    
T  40445870 taaaggcttaattgcacttttggacccctatct 40445838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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