View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_low_69 (Length: 308)

Name: NF2324_low_69
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_low_69
NF2324_low_69
[»] chr1 (5 HSPs)
chr1 (18-293)||(51036880-51037155)
chr1 (29-123)||(40611732-40611826)
chr1 (38-123)||(51067544-51067629)
chr1 (38-105)||(51033492-51033559)
chr1 (38-105)||(51070175-51070242)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 51036880 - 51037155
Alignment:
Q  18 gttatcagaagtaaagacaatacctgtaaagtcctaaggatgttgtgagtccagcaattccagctcccacaatcacaatatcttcttcaattacagtttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51036880 gttatcagaagtaaagacaatacctgtaaagtcctaaggatgttgtgagtccagcaattccagctcccacaatcacaatatcttcttcaattacagtttc 51036979  T
Q  118 cattacgaataaatatatagttcactctctttaagattttattagaatggagtgcgtaagcacaatgctttaaagaacagaatcgcaagaagtatatata 217  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51036980 cattacgaataaatatatagttcactatctttaagtttttattagaatggagtgggtaagcacaatgctttaaagaacagaatcgcaagaagtatatata 51037079  T
Q  218 tagggatacaattgggcaaagatgatgcaacgacaccgacgttattcacatattatattttttaacataatttcat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51037080 tagggatacaattgggcaaagatgatgcaacgacaccgacgttattcacatattatattttttaacataatttcat 51037155  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 40611826 - 40611732
Alignment:
Q  29 taaagacaatacctgtaaagtcctaaggatgttgtgagtccagcaattccagctcccacaatcacaatatcttcttcaattacagtttccattac 123  Q
    |||||| ||||||||| |||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | ||||||||    
T  40611826 taaagagaatacctgtgaagtgccaaggatgttgtgaggccagcaattccagctcccacaatcacaatatcttcttcaactacaatctccattac 40611732  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 51067544 - 51067629
Alignment:
Q  38 tacctgtaaagtcctaaggatgttgtgagtccagcaattccagctcccacaatcacaatatcttcttcaattacagtttccattac 123  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||||| || ||||||||||||| | |||| ||||||||||||||    
T  51067544 tacctgtgaagtcccaaggatgttgtgaggccagcaattccagctcctacgatcacaatatcttttacaatcacagtttccattac 51067629  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 51033492 - 51033559
Alignment:
Q  38 tacctgtaaagtcctaaggatgttgtgagtccagcaattccagctcccacaatcacaatatcttcttc 105  Q
    ||||||| |||| | || ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51033492 tacctgtgaagtgccaaagatgttgtgagaccagcaattccagctcccacaatcacaatatcttcttc 51033559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 51070175 - 51070242
Alignment:
Q  38 tacctgtaaagtcctaaggatgttgtgagtccagcaattccagctcccacaatcacaatatcttcttc 105  Q
    ||||||| |||||||||||  || |  || |||||||||||||||||||||||||||| |||||||||    
T  51070175 tacctgtgaagtcctaaggcagtagcaaggccagcaattccagctcccacaatcacaacatcttcttc 51070242  T

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