View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_low_74 (Length: 296)
Name: NF2324_low_74
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_74 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 42031001 - 42030705
Alignment:
| Q |
1 |
cacagtatcctgggttttcttttctctagtgtgctgatgtttgtgctataatcctgttgtgagtactgggagctggtgttgaagaaattttatgctcggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42031001 |
cacagtatcctgggttttcttttctctagtgtgctgatgtttgtgctataatcctattgtgagtactgggagctggtgttgaagaaattttatgctcggc |
42030902 |
T |
|
| Q |
101 |
tgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttattaaacccatggtataaaatagcatcaagattaattttggttgtggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42030901 |
tgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttattaaacccttagtataaaatagcatcaaaattaattttggttgtggg |
42030802 |
T |
|
| Q |
201 |
taacttttggtttggagttttatggtttcaggtgtttg---------tatttggtgttctgtctatatgcggcacctattgtttgtattgatgatgt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42030801 |
taacttttggtttggagttttatggtttcaggtgtttgtattgtttgtatttggtgttccgtctatatgcggcacctattgtttgtattgatgatgt |
42030705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 5996924 - 5996628
Alignment:
| Q |
1 |
cacagtatcctgggttttcttttctctagtgtgctgatgtttgtgctataatcctgttgtgagtactgggagctggtgttgaagaaattttatgctcggc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||| | | ||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5996924 |
cacagtagcctgggttttcttttctctggtgtgctgatgtttgtgttgttatcctattgtgagtactgggagctggtgttgaagcaattttatgctcggc |
5996825 |
T |
|
| Q |
101 |
tgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttattaaacccatggtataaaatagcatcaagattaattttggttgtggg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5996824 |
tgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttattgaacccttagtataaaatagcatcaggattaattttggttgtggg |
5996725 |
T |
|
| Q |
201 |
taacttttggtttggagttttatggtttcaggtgtttg---------tatttggtgttctgtctatatgcggcacctattgtttgtattgatgatgt |
288 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5996724 |
taacttttgatttcgagttttatggtttcgggtgtttgtattgtttgtatttggtgttccgtctatatgaggcacctattgtttgtattgatgatgt |
5996628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 16102105 - 16102203
Alignment:
| Q |
57 |
ttgtgagtactgggagctggtgttgaagaaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttatt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16102105 |
ttgtgagtactgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttggtttcggctaccttatt |
16102203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 16102232 - 16102288
Alignment:
| Q |
233 |
tgtttgtatttggtgttctgtctatatgcggcacct-attgtttgtattgatgatgt |
288 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
16102232 |
tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt |
16102288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 12210486 - 12210388
Alignment:
| Q |
57 |
ttgtgagtactgggagctggtgttgaagaaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttatt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12210486 |
ttgtgagtactgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttggtttcggctaccttatt |
12210388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 12210359 - 12210303
Alignment:
| Q |
233 |
tgtttgtatttggtgttctgtctatatgcggcacct-attgtttgtattgatgatgt |
288 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
12210359 |
tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt |
12210303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 17618625 - 17618527
Alignment:
| Q |
57 |
ttgtgagtactgggagctggtgttgaagaaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttatt |
155 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17618625 |
ttgtgagtattgggagctggtcttgaagcaattttatgctcggctgggtttggaggatttcgcaaggccattgttgtttttggtttcggctaccttatt |
17618527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University