View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_75 (Length: 292)
Name: NF2324_low_75
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 25818339 - 25818623
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacctgtgtccctttgtcctgagtttc |
100 |
Q |
| |
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|||||||||| |||||| |||||| || || ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25818339 |
atgattggaccaagtgccactttgtccaccccggggaaaacgcaaggcgccgtgatctgaggaaatatcattacacctgtgtccctttgtcctgagtttc |
25818438 |
T |
|
| Q |
101 |
ggaaagggccatgcagcaaaggggatgcttgtgaatatgcacatggtattttcgagtgctggcttcatcctggtcaatatagaacaaggcattgcaagga |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25818439 |
ggaaagggtcatgcagcaaaggggatgcttgtgaatatgcacatggtatttgcgagtgctggcttcatcctggtcaatatagaacaaggcattgcaagga |
25818538 |
T |
|
| Q |
201 |
tgaaacctgctgcaccagaagcgtttgcatttttgctcacaaacccgaggagcttcgaccactgtatgatttcacaggttctgct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
25818539 |
tgaaacctgctgcaccagaagcgtttgcatttttgctcacaaacccgaggagcttcgaccactgtatgattttacgggttctgct |
25818623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 25812673 - 25812930
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacctgtgtccctttgtcctgagtttc |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||||| |||||||||| | || ||||||| |
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| T |
25812673 |
atgattggactgagtgcccctttgttcatccagggga-aacgcaaggcgccgtgattcgaggaaatatcattacacatgtgtccctt-gccccgagtttc |
25812770 |
T |
|
| Q |
101 |
ggaaagggccatgcagcaaaggggatgcttgtgaatatgcacatggtattttcgagtgctggcttcatcctggtcaatatagaacaaggcattgcaagga |
200 |
Q |
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|||| || |||| || ||||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||||| |||||||| ||||||||| |
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| T |
25812771 |
ggaagggatcatgtagaaaaggggatgcttgtgaatatgcacatggtatttttgaatgctggcttcatccagctcaatatataacaaggctttgcaagga |
25812870 |
T |
|
| Q |
201 |
tgaaacctgctgcaccagaagcgtttgcatttttgctcacaaacccgaggagcttcgacc |
260 |
Q |
| |
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||||||| | ||||||||||| |||||| |||||||||||||||| |||||||||||||| |
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| T |
25812871 |
tgaaaccagatgcaccagaagggtttgcttttttgctcacaaaccagaggagcttcgacc |
25812930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 25821701 - 25821956
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacctgtgtccctttgtcctgagtttc |
100 |
Q |
| |
|
|||||||||| || || ||||||| |||| ||||||| | ||||||||||||||||||| ||||||| |||||| |||||| || ||||| ||| |||| |
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| T |
25821701 |
atgattggacagaatgtccctttgctcattctggggaaatcgcaaggcgccgtgatccgaagaaatattattacagctgtgt-ccattgtcatgaatttc |
25821799 |
T |
|
| Q |
101 |
ggaaagggccatgcagcaaaggggatgcttgtgaatatgcacatggtattttcgagtgctggcttcatcctggtcaatatagaacaaggcattgcaagga |
200 |
Q |
| |
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||| || ||||||| ||||||||| | ||| |||||||||||||| |||| |||| |||||| |||||||||| ||| ||||||| || |||||| | |
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| T |
25821800 |
agaatggatcatgcagtaaaggggatacatgtcaatatgcacatggtgtttttgagtcctggctgcatcctggtcgatacagaacaacgctttgcaataa |
25821899 |
T |
|
| Q |
201 |
tgaaacctgctgcaccagaagcgtttgcatttttgctcacaaacccgaggagcttcg |
257 |
Q |
| |
|
|| ||| ||||| ||| ||||| | |||||||||||||||||||||||||| |
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|
| T |
25821900 |
tggaactaaatgcacaagagaaatttgcttctttgctcacaaacccgaggagcttcg |
25821956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 25816029 - 25816107
Alignment:
| Q |
118 |
aaaggggatgcttgtgaatatgcacatggtattttcgagtgctggcttcatcctggtcaatatagaacaaggcattgca |
196 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||| |||| | |||| |||||| ||| ||| ||||||| | |||||| |
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|
| T |
25816029 |
aaaggggatgcatgtgaatatgcacatggtgcttttgagtccgggctgcatcctagtcgatacagaacaatgtattgca |
25816107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31810693 - 31810735
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgc |
43 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
31810693 |
atgattggactgagtgtccatttgttcatccaggggagaatgc |
31810735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 33647871 - 33648155
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacctgtgtccctttgtcctgagtttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| |||||||||| | || ||||||| |
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|
| T |
33647871 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgcgatctgaggaaatgtcattacacatgtgtccctt-gccccgagtttc |
33647969 |
T |
|
| Q |
101 |
ggaaagggccatgcagcaaaggggatgcttgtgaatatgcacatggtattttcgagtgctggcttcatcctggtcaatatagaacaaggcattgcaagga |
200 |
Q |
| |
|
|||| || |||||| |||||||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||| ||||||||| |
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| T |
33647970 |
ggaagggatcatgcaacaaaggggatgcttctgaatatgcacatggtatttttgaatgctggcttcatcctgctcaatacagaacaaggctttgcaagga |
33648069 |
T |
|
| Q |
201 |
tgaaacctgctgcaccagaagcgtttgcatttttgctcacaaacccgaggagcttcgaccactgtatgatttcacaggttctgctc |
286 |
Q |
| |
|
|||||| | ||||| ||||| |||||| |||| |||||||| || |||||||||||||| |||||| || || |||||||||| |
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|
| T |
33648070 |
tgaaactagatgcacgagaagggtttgctttttcgctcacaagccagaggagcttcgaccgttgtatgcttctaccggttctgctc |
33648155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 30122299 - 30122554
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacctgtgtccctttgtcctgagtttc |
100 |
Q |
| |
|
|||||||||| ||||| || ||||||||||| ||||| ||||||||||| || ||||| |||||||||||||| | ||| ||||||| |||||||||||| |
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|
| T |
30122299 |
atgattggaccgagtgtccttttgttcatccaggggaaaatgcaaggcgacgcgatccaaggaaatatcattatagctgcgtccctt-gtcctgagtttc |
30122397 |
T |
|
| Q |
101 |
ggaaagggccatgcagcaaaggggatgcttgtgaatatgcacatggtattttcgagtgctggcttcatcctggtcaatatagaacaaggcattgcaagga |
200 |
Q |
| |
|
||||||| | ||||| ||||| ||| ||||||| |||||||| |||||||| ||||||||||||||||||| || |||| ||| ||| ||||||||| |
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|
| T |
30122398 |
ggaaaggatcttgcagtaaaggagattcttgtgactatgcacacggtatttttgagtgctggcttcatcctgcgcagtataagacacggctttgcaagga |
30122497 |
T |
|
| Q |
201 |
tgaaacctgctgcaccagaagcgtttgcatttttgctcacaaacccgaggagcttcg |
257 |
Q |
| |
|
||| | | |||| ||||| |||||| | ||||||||||| |||||||||||| |
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|
| T |
30122498 |
tgagagtttgtgcatgagaagagtttgcttctttgctcacaaggtcgaggagcttcg |
30122554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 35643701 - 35643951
Alignment:
| Q |
3 |
gattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacctgtgtccctttgtcctgagtttcgg |
102 |
Q |
| |
|
|||||||| ||||| |||||||||||||| || |||||||||||| | | || || |||||||| | ||||| |||||| || | | || |||||||| |
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| T |
35643701 |
gattggacggagtgtccctttgttcatccaggtgagaatgcaaggaggagagacccaaggaaatacccttacagctgtgttccct-gcccagagtttcgc |
35643799 |
T |
|
| Q |
103 |
aaagggccatgcagcaaaggggatgcttgtgaatatgcacatggtattttcgagtgctggcttcatcctggtcaatatagaacaaggcattgcaaggatg |
202 |
Q |
| |
|
|||||| | ||| ||||||||| ||||||| |||||||||||| ||||||||| ||||| ||||| | ||||| ||||||||| ||||||||| | |
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|
| T |
35643800 |
aaagggtcttgccagaaaggggattcttgtgagtatgcacatggtgttttcgagtcatggctacatcccgcacaataccgaacaaggctttgcaaggacg |
35643899 |
T |
|
| Q |
203 |
aaacctgctgcaccagaagcgtttgcatttttgctcacaaacccgaggagct |
254 |
Q |
| |
|
| || |||||| |||| || ||| | |||||||||| |||||| ||||| |
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|
| T |
35643900 |
agactggctgcaatagaaaagtctgcttctttgctcacagacccgaagagct |
35643951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 36456268 - 36456451
Alignment:
| Q |
1 |
atgattggactgagtgcccctttgttcatcctggggagaatgcaaggcgccgtgatccgaggaaatatcattacacctgtgtccctttgtcctgagtttc |
100 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||||||||| || | | || ||||| || |||||||||| ||||||||| ||||||||| |||| |
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|
| T |
36456268 |
atgattggactgaatgcccttttgttcatccaggggagaatgcccggagaagggacccgagaaagtatcattacagctgtgtccc-ttgtcctgattttc |
36456366 |
T |
|
| Q |
101 |
ggaaagggccatgcagcaaaggggatgcttgtgaatatgcacatggtattttcgagtgctggcttcatcctggtcaatatagaac |
185 |
Q |
| |
|
| || || | ||| | ||||| ||||||||||| ||||| |||||||||||||||| ||||||| ||||||||||| |
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|
| T |
36456367 |
gcaagggtgcttgccggcgtggggacatgtgtgaatatgctcatggggttttcgagtgctggctgcatcctgcacaatatagaac |
36456451 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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