View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_low_8 (Length: 666)

Name: NF2324_low_8
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_low_8
NF2324_low_8
[»] chr3 (14 HSPs)
chr3 (116-658)||(30790298-30790839)
chr3 (18-93)||(30790837-30790917)
chr3 (526-645)||(30798668-30798787)
chr3 (526-645)||(30868381-30868499)
chr3 (315-431)||(30718934-30719050)
chr3 (575-630)||(30706202-30706257)
chr3 (354-433)||(30798884-30798963)
chr3 (577-649)||(30719187-30719259)
chr3 (575-650)||(30699367-30699442)
chr3 (355-431)||(30705983-30706059)
chr3 (354-433)||(30868205-30868284)
chr3 (134-173)||(1860184-1860223)
chr3 (76-131)||(35620791-35620846)
chr3 (162-214)||(39021660-39021711)
[»] chr4 (5 HSPs)
chr4 (328-415)||(24241025-24241112)
chr4 (366-424)||(24231136-24231194)
chr4 (136-181)||(14123716-14123761)
chr4 (139-187)||(24349454-24349502)
chr4 (136-176)||(43072222-43072262)
[»] chr1 (3 HSPs)
chr1 (136-210)||(26631695-26631768)
chr1 (114-176)||(1244273-1244335)
chr1 (136-210)||(10313845-10313918)
[»] chr2 (2 HSPs)
chr2 (139-210)||(865846-865916)
chr2 (141-210)||(6527412-6527480)
[»] chr7 (8 HSPs)
chr7 (572-650)||(23026504-23026582)
chr7 (572-650)||(23035308-23035386)
chr7 (119-176)||(21182348-21182408)
chr7 (588-645)||(23081099-23081156)
chr7 (146-206)||(47451011-47451070)
chr7 (76-131)||(45971656-45971711)
chr7 (572-625)||(23057856-23057909)
chr7 (597-650)||(23091992-23092045)
[»] chr6 (2 HSPs)
chr6 (136-210)||(27897956-27898028)
chr6 (136-181)||(20809082-20809127)
[»] chr8 (3 HSPs)
chr8 (143-176)||(42205354-42205387)
chr8 (140-177)||(26514716-26514753)
chr8 (136-180)||(24691921-24691965)
[»] chr5 (2 HSPs)
chr5 (115-168)||(32056162-32056218)
chr5 (136-176)||(4445367-4445407)


Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 116 - 658
Target Start/End: Complemental strand, 30790839 - 30790298
Alignment:
Q  116 atatgtttatctctatttcttttttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaattttg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30790839 atatgtttatctctatttcttttttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcgtatttgacatcaaattttg 30790740  T
Q  216 acgtctaaatttannnnnnnnnagtattattatgtatccatatttattggttctatgagggattcaatcaaccaaataagtaagttagggagcaagaaaa 315  Q
    |||||||| |||          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30790739 acgtctaatttt-tttttttttagtattattatgtatccatatttattggttctatgtgggattcaatcaaccaaataagtaagttagggagcaagaaaa 30790641  T
Q  316 ttacatgttctacaagtggggttctggttgcccatggtacaacacaattgctccttatgttgtctattgcccattcacaggccagattttttgtaagctg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30790640 ttacatgttctacaagtggggttctggttgcccatggtacaacacaattgctccttatgttgtctattgcccattcacaggccagattttttgtaagctg 30790541  T
Q  416 attaattgcagctgaaaattcaacggatgaaacataattttcgtttgatcgtaacattttattaatcacatttacatgnnnnnnntaaaagaactaacga 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  30790540 attaattgcagctgaaaattcaacggatgaaacataattttcgtttgatcgtaacattttattaatcacatttacatgaaaaaaataaaagaactaacga 30790441  T
Q  516 gtgtagcactcacctttacttgctgcgtagacagatccagtacctaagctaaccacacctgcaacagatgaaatgaacacaatgctaccatttccagatt 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30790440 gtgtagcactcacctttacttgctgcgtagacagatccagtacctaagctaaccacacctgcaacagatgaaatgaacacaatgctaccatttccagatt 30790341  T
Q  616 cttttagaagaggatgtgaaagttggcacagatggaatgatga 658  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  30790340 cttttagaagaggatgtgaaagttggcacagatggaatgatga 30790298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 30790917 - 30790837
Alignment:
Q  18 agtccatataatcaatcataagcggacc-----ttacagatgataataatactaaagaaattatatttgaacatcaaaata 93  Q
    ||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30790917 agtccatataatcaatcataagcggaccggaccttacagatgataataatactaaagaaattatatttgaacatcaaaata 30790837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 526 - 645
Target Start/End: Complemental strand, 30798787 - 30798668
Alignment:
Q  526 cacctttacttgctgcgtagacagatccagtacctaagctaaccacacctgcaacagatgaaatgaacacaatgctaccatttccagattcttttagaag 625  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||| || |||| ||| |||||||| |||||||| ||  ||||| || | ||||||||    
T  30798787 cacctttacttgctgcatagactgatccagtacctaagctcaccacgccagcaatagaggaaatgaatacaatgcttcccattccatatgcctttagaag 30798688  T
Q  626 aggatgtgaaagttggcaca 645  Q
    |||||||| |||||| ||||    
T  30798687 aggatgtgtaagttgacaca 30798668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 526 - 645
Target Start/End: Original strand, 30868381 - 30868499
Alignment:
Q  526 cacctttacttgctgcgtagacagatccagtacctaagctaaccacacctgcaacagatgaaatgaacacaatgctaccatttccagattcttttagaag 625  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||| || |||| ||| |||||||| |||||||| ||  ||||||||   ||||||||    
T  30868381 cacctttacttgctgcatagactgatccagtacctaagctcaccacgccagcaatagaggaaatgaatacaatgcttcccattccagatgtctttagaag 30868480  T
Q  626 aggatgtgaaagttggcaca 645  Q
    ||||| || |||||||||||    
T  30868481 aggat-tgtaagttggcaca 30868499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 30718934 - 30719050
Alignment:
Q  315 attacatgttctacaagtggggttctggttgcccatggtacaacacaattgctccttatgttgtctattgcccattcacaggccagattttttgtaagct 414  Q
    ||||||||||| |||||||| ||| | ||   ||| ||| | ||||| |||||||||||||||||| | ||||||||||| || ||| ||||||| ||||    
T  30718934 attacatgttccacaagtggtgtttttgtataccagggtgcgacacagttgctccttatgttgtctttcgcccattcacaagcaagactttttgtcagct 30719033  T
Q  415 gattaattgcagctgaa 431  Q
    |||| ||||||||||||    
T  30719034 gattgattgcagctgaa 30719050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 575 - 630
Target Start/End: Original strand, 30706202 - 30706257
Alignment:
Q  575 tgcaacagatgaaatgaacacaatgctaccatttccagattcttttagaagaggat 630  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  30706202 tgcaacagaggaaatgaacacaatgcttccatttccagattctttaagaagaggat 30706257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 30798963 - 30798884
Alignment:
Q  354 acaacacaattgctccttatgttgtctattgcccattcacaggccagattttttgtaagctgattaattgcagctgaaaa 433  Q
    |||||||||||||||||||||   ||| ||||||||||||| ||||  ||||||||||||||| | ||||||||||||||    
T  30798963 acaacacaattgctccttatgccatcttttgcccattcacaagccaagttttttgtaagctgagtgattgcagctgaaaa 30798884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 577 - 649
Target Start/End: Original strand, 30719187 - 30719259
Alignment:
Q  577 caacagatgaaatgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatg 649  Q
    ||||||| |||||||| |||||||| ||||||||||||||||| |||||||||| ||  |||||||| |||||    
T  30719187 caacagaggaaatgaaaacaatgcttccatttccagattctttaagaagaggatatgtcagttggcatagatg 30719259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 650
Target Start/End: Original strand, 30699367 - 30699442
Alignment:
Q  575 tgcaacagatgaaatgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatgg 650  Q
    ||||||||| ||| |||| |||||||| ||||||||||||||||| |||||||||| ||  |||||||| ||||||    
T  30699367 tgcaacagaggaattgaatacaatgcttccatttccagattctttaagaagaggatatgtcagttggcatagatgg 30699442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 30705983 - 30706059
Alignment:
Q  355 caacacaattgctccttatgttgtctattgcccattcacaggccagattttttgtaagctgattaattgcagctgaa 431  Q
    ||||||| ||||||||||| |||||| ||||||||||||| || ||||| ||||| |||||||| || || ||||||    
T  30705983 caacacagttgctccttatattgtcttttgcccattcacaagcaagattctttgttagctgattgatcgcggctgaa 30706059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 433
Target Start/End: Original strand, 30868205 - 30868284
Alignment:
Q  354 acaacacaattgctccttatgttgtctattgcccattcacaggccagattttttgtaagctgattaattgcagctgaaaa 433  Q
    ||||||||||| |||||||||   ||| ||||||||||||| ||||  ||||||||||||||  | ||||||||||||||    
T  30868205 acaacacaattactccttatgccatcttttgcccattcacaagccaatttttttgtaagctgggtgattgcagctgaaaa 30868284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 1860184 - 1860223
Alignment:
Q  134 cttttttatcttctacaacttacacacatttaaaaaatac 173  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  1860184 cttttttatcttctacaactaacacacatttcaaaaatac 1860223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 35620846 - 35620791
Alignment:
Q  76 tatttgaacatcaaaatacagttactatatgcgacatcgtatatgtttatctctat 131  Q
    ||||||||||||||||||||  ||| ||||| |||| |||||||| ||||||||||    
T  35620846 tatttgaacatcaaaatacaactaccatatgtgacaccgtatatgcttatctctat 35620791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 39021660 - 39021711
Alignment:
Q  162 tttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaatttt 214  Q
    |||||||||||||||| ||| |||||  ||||| |||||||||||||||||||    
T  39021660 tttaaaaaatacacatgaaaatcaaattacact-atatttgacatcaaatttt 39021711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 328 - 415
Target Start/End: Complemental strand, 24241112 - 24241025
Alignment:
Q  328 caagtggggttctggttgcccatggtacaacacaattgctccttatgttgtctattgcccattcacaggccagattttttgtaagctg 415  Q
    |||| ||||||||| ||| || |||| ||||||||||  |||||||||||||| | ||||||||||| |||| |||||||||||||||    
T  24241112 caagaggggttctgattggccctggtgcaacacaattagtccttatgttgtctttagcccattcacatgccaaattttttgtaagctg 24241025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 424
Target Start/End: Complemental strand, 24231194 - 24231136
Alignment:
Q  366 ctccttatgttgtctattgcccattcacaggccagattttttgtaagctgattaattgc 424  Q
    ||||||||||||||| ||||||||||||| || |||||| | ||||| |||||||||||    
T  24231194 ctccttatgttgtcttttgcccattcacaagctagatttctcgtaagttgattaattgc 24231136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 14123716 - 14123761
Alignment:
Q  136 tttttatcttctacaacttacacacatttaaaaaatacacataaaa 181  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||    
T  14123716 tttttatcttctacaacttatacacattttaaaaatacacacaaaa 14123761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 24349454 - 24349502
Alignment:
Q  139 ttatcttctacaacttacacacatttaaaaaatacacataaaactcaaa 187  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||| |||||    
T  24349454 ttatcttatacaacttatacacattaaaaaaatacacataaaaatcaaa 24349502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 43072222 - 43072262
Alignment:
Q  136 tttttatcttctacaacttacacacatttaaaaaatacaca 176  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  43072222 tttttatcttctacagcttacacacatttcaaaaatacaca 43072262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 26631695 - 26631768
Alignment:
Q  136 tttttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaa 210  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||||| ||||| ||||| | ||||||||||||||    
T  26631695 tttttatattctacaacttacacacattttaaaaatacacgtaaaaatcaaaagacac-cctatttgacatcaaa 26631768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 1244273 - 1244335
Alignment:
Q  114 gtatatgtttatctctatttcttttttatcttctacaacttacacacatttaaaaaatacaca 176  Q
    ||||||||||| ||||| ||  |||||||||||||||| |||||||  || ||||||||||||    
T  1244273 gtatatgtttacctctagttactttttatcttctacaatttacacattttaaaaaaatacaca 1244335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 10313845 - 10313918
Alignment:
Q  136 tttttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaa 210  Q
    |||||||||| |||||||||||   |||| |||| |||||| |||| ||||| ||||| ||||||||||||||||    
T  10313845 tttttatcttgtacaacttacatgaatttcaaaattacacacaaaaatcaaatgacac-catatttgacatcaaa 10313918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 865916 - 865846
Alignment:
Q  139 ttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaa 210  Q
    |||||| ||||||||||||||||||| |||||||| ||||||| ||||| |||| | |||||||||||||||    
T  865916 ttatctactacaacttacacacattttaaaaatacgcataaaaatcaaatgaca-ttatatttgacatcaaa 865846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 6527412 - 6527480
Alignment:
Q  141 atcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaa 210  Q
    |||||||||||||| ||  ||||||||||||||||||||||  ||||||||| ||||| | |||||||||    
T  6527412 atcttctacaacttgcatgcatttaaaaaatacacataaaaaccaaaggaca-tcatactcgacatcaaa 6527480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 650
Target Start/End: Complemental strand, 23026582 - 23026504
Alignment:
Q  572 acctgcaacagatgaaatgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatgg 650  Q
    ||||||||| || ||| ||||||| ||||| |||| |||||||| ||||||||||||||||| |||||| |||| ||||    
T  23026582 acctgcaacggaagaagtgaacactatgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatgg 23026504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 650
Target Start/End: Complemental strand, 23035386 - 23035308
Alignment:
Q  572 acctgcaacagatgaaatgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatgg 650  Q
    ||||||||| || ||| ||||||| ||||| |||| |||||||| ||||||||||||||||| |||||| |||| ||||    
T  23035386 acctgcaacggaagaagtgaacactatgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatgg 23035308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 21182348 - 21182408
Alignment:
Q  119 tgtttatctctatttctt---ttttatcttctacaacttacacacatttaaaaaatacaca 176  Q
    ||||||||||||| ||||   |||||| |||||||||||| ||||||||||||||||||||    
T  21182348 tgtttatctctatctcttactttttattttctacaacttaaacacatttaaaaaatacaca 21182408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 645
Target Start/End: Complemental strand, 23081156 - 23081099
Alignment:
Q  588 atgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcaca 645  Q
    ||||| |||||||| ||||||||||||| |||||||||||| |||| |||||| ||||    
T  23081156 atgaatacaatgcttccatttccagattgttttagaagagggtgtgcaagttgacaca 23081099  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 47451011 - 47451070
Alignment:
Q  146 ctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacat 206  Q
    ||||||||| |||||| ||||||||||||||||||| ||||| ||||| | ||||||||||    
T  47451011 ctacaacttgcacacaattaaaaaatacacataaaaatcaaatgacac-cgtatttgacat 47451070  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 45971656 - 45971711
Alignment:
Q  76 tatttgaacatcaaaatacagttactatatgcgacatcgtatatgtttatctctat 131  Q
    ||||||||||||||||||||  |||  |||| |||||| |||||||||||||||||    
T  45971656 tatttgaacatcaaaatacaaataccgtatgtgacatcttatatgtttatctctat 45971711  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 625
Target Start/End: Complemental strand, 23057909 - 23057856
Alignment:
Q  572 acctgcaacagatgaaatgaacacaatgctaccatttccagattcttttagaag 625  Q
    |||| ||||||| || |||||||| ||||| |||| ||||||||||||||||||    
T  23057909 acctccaacagaagatatgaacactatgcttccatatccagattcttttagaag 23057856  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 650
Target Start/End: Complemental strand, 23092045 - 23091992
Alignment:
Q  597 atgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatgg 650  Q
    ||||| |||| |||||||| ||||||||||||||||| |||||| |||| ||||    
T  23092045 atgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatgg 23091992  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 27898028 - 27897956
Alignment:
Q  136 tttttatcttctacaacttacacacatttaaaaaatacacataaaactcaaaggacactcatatttgacatcaaa 210  Q
    ||||||||||||| || ||||||||||||| ||||||||||||||| |||||  |||| | ||||||||||||||    
T  27898028 tttttatcttctataatttacacacattta-aaaatacacataaaaatcaaaacacac-cgtatttgacatcaaa 27897956  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 20809127 - 20809082
Alignment:
Q  136 tttttatcttctacaacttacacacatttaaaaaatacacataaaa 181  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||    
T  20809127 tttttatcttttacaacatacacacatttaaaaaatacacacaaaa 20809082  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 42205387 - 42205354
Alignment:
Q  143 cttctacaacttacacacatttaaaaaatacaca 176  Q
    ||||||||||||||||||||||||||||||||||    
T  42205387 cttctacaacttacacacatttaaaaaatacaca 42205354  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 26514753 - 26514716
Alignment:
Q  140 tatcttctacaacttacacacatttaaaaaatacacat 177  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  26514753 tatcttttacaacttacacacattttaaaaatacacat 26514716  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 24691921 - 24691965
Alignment:
Q  136 tttttatcttctacaacttacacacatttaaaaaatacacataaa 180  Q
    |||||||||||||||||  ||||||||||  ||||||||||||||    
T  24691921 tttttatcttctacaacaaacacacatttggaaaatacacataaa 24691965  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 32056162 - 32056218
Alignment:
Q  115 tatatgtttatctctat-ttct--tttttatcttctacaacttacacacatttaaaa 168  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||| ||| |||||    
T  32056162 tatatgtttatctctatcttctactttttatcttctacaacttacactcatgtaaaa 32056218  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 4445407 - 4445367
Alignment:
Q  136 tttttatcttctacaacttacacacatttaaaaaatacaca 176  Q
    ||||||| |||||||||||||| |||||| |||||||||||    
T  4445407 tttttatattctacaacttacaaacatttcaaaaatacaca 4445367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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