View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2324_low_82 (Length: 267)

Name: NF2324_low_82
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2324_low_82
NF2324_low_82
[»] chr5 (5 HSPs)
chr5 (60-216)||(29126642-29126798)
chr5 (176-251)||(29126553-29126629)
chr5 (104-153)||(19948232-19948281)
chr5 (104-182)||(1497818-1497895)
chr5 (104-182)||(42307036-42307113)
[»] chr4 (6 HSPs)
chr4 (108-182)||(39838859-39838933)
chr4 (99-175)||(42141725-42141801)
chr4 (104-153)||(4414035-4414084)
chr4 (104-162)||(1406890-1406948)
chr4 (104-162)||(38388500-38388558)
chr4 (106-182)||(53392769-53392846)
[»] chr2 (9 HSPs)
chr2 (104-177)||(28200046-28200119)
chr2 (110-162)||(38607571-38607623)
chr2 (104-182)||(3919492-3919570)
chr2 (104-182)||(33036665-33036743)
chr2 (104-162)||(44018571-44018629)
chr2 (107-162)||(33221128-33221182)
chr2 (99-153)||(31112156-31112210)
chr2 (99-153)||(36009667-36009723)
chr2 (99-182)||(22847829-22847910)
[»] chr3 (9 HSPs)
chr3 (104-162)||(22240918-22240976)
chr3 (104-182)||(26918105-26918181)
chr3 (93-147)||(35847766-35847820)
chr3 (107-182)||(779126-779200)
chr3 (104-182)||(33231132-33231211)
chr3 (94-162)||(27524443-27524512)
chr3 (99-176)||(30553729-30553806)
chr3 (106-182)||(44681620-44681697)
chr3 (110-182)||(46893060-46893132)
[»] chr6 (7 HSPs)
chr6 (104-176)||(11846729-11846801)
chr6 (99-182)||(7176111-7176194)
chr6 (104-176)||(11971900-11971973)
chr6 (105-162)||(26880285-26880342)
chr6 (94-177)||(20722885-20722967)
chr6 (104-162)||(1147981-1148039)
chr6 (110-182)||(32613532-32613604)
[»] chr8 (7 HSPs)
chr8 (103-182)||(9505513-9505591)
chr8 (104-157)||(25807817-25807870)
chr8 (104-162)||(25343643-25343702)
chr8 (104-162)||(25654393-25654452)
chr8 (99-153)||(35949490-35949544)
chr8 (103-182)||(32322284-32322363)
chr8 (108-162)||(3767288-3767341)
[»] chr7 (7 HSPs)
chr7 (102-182)||(49124695-49124775)
chr7 (104-162)||(46264863-46264921)
chr7 (102-162)||(19601802-19601862)
chr7 (106-182)||(25544833-25544908)
chr7 (106-153)||(11726998-11727045)
chr7 (99-182)||(45595812-45595894)
chr7 (116-162)||(22331491-22331537)
[»] scaffold0070 (1 HSPs)
scaffold0070 (104-162)||(34277-34336)
[»] scaffold1335 (1 HSPs)
scaffold1335 (93-147)||(443-497)
[»] chr1 (4 HSPs)
chr1 (104-153)||(4407279-4407328)
chr1 (104-153)||(12069879-12069928)
chr1 (104-149)||(18461669-18461714)
chr1 (104-153)||(11620604-11620653)
[»] scaffold0564 (1 HSPs)
scaffold0564 (104-156)||(6800-6852)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 29126798 - 29126642
Alignment:
Q  60 cttaaatgaaaccaaattaaactaatttgtatgaatcaatttgattgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgca 159  Q
    |||||| ||||||||||||||||||||| | || ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29126798 cttaaacgaaaccaaattaaactaatttttctggatcaatttggttgatcggtttgtttgaaaatacaattgaaaaaatttatattctcacaaatttgca 29126699  T
Q  160 tttgatatatacaacatattcaatttttatttgagcaaacaacatactcaaatattt 216  Q
    |||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||    
T  29126698 tttgatgtatacaacatacttaatttttatttgagcaaacaacatactcaattattt 29126642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 29126629 - 29126553
Alignment:
Q  176 tattcaatttttatttgagcaaacaacatactcaaatatttcatccaaatgatatattcatcgatca-tcatcaaac 251  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  29126629 tattctatttttatttgagcaaacaacatactcaaatatttcatccaaatgatacattcatccatcattcatcaaac 29126553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 19948281 - 19948232
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaa 153  Q
    ||||||| ||||||| ||||||||||| |||||||| |||||||||||||    
T  19948281 ttgatcgatttatttaaaaatacaattaaaaaaattcatattctcacaaa 19948232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 1497818 - 1497895
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    ||||||||||| ||||||||||||| | |||||| | ||||| |||||||||||  ||| || ||||||||||| ||||    
T  1497818 ttgatcggtttgtttgaaaatacaa-taaaaaaaatcatattttcacaaatttgtgtttcatctatacaacatactcaa 1497895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 42307113 - 42307036
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    |||||||||||  |||||||||||||| ||||||| ||||||||||| || ||| |||| ||  |||||||||| ||||    
T  42307113 ttgatcggtttgattgaaaatacaatt-aaaaaatctatattctcacgaaattgtatttcatgcatacaacatactcaa 42307036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 39838859 - 39838933
Alignment:
Q  108 tcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    ||||||| ||||||||||||||| |||||||||| ||| ||||||||||| |||| |||||||||||||| ||||    
T  39838859 tcggtttgtttgaaaatacaattaaaaaaatttaaattttcacaaatttgtatttcatatatacaacataatcaa 39838933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 42141801 - 42141725
Alignment:
Q  99 tttgattgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaaca 175  Q
    |||| ||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||| |||| ||  ||||||||    
T  42141801 tttggttgatcggtttgtttgaaaatacaattaaaaaaattcatattttcacaaatttgtatttcatgcatacaaca 42141725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 4414084 - 4414035
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaa 153  Q
    ||||||||||||||| ||||||||||| |||||| |||||||||||||||    
T  4414084 ttgatcggtttatttaaaaatacaattaaaaaaaattatattctcacaaa 4414035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 1406948 - 1406890
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||| |||||||||||||||| |||| |||||||| ||||||||| ||||||| ||||    
T  1406948 ttgattggtttatttgaaaatataattaaaaaaattaatattctcataaatttgtattt 1406890  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 38388558 - 38388500
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||| ||||||||||||||||||||  ||||||||  |||||||||||||||| ||||    
T  38388558 ttgattggtttatttgaaaatacaatgtaaaaaattcttattctcacaaatttgtattt 38388500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 53392769 - 53392846
Alignment:
Q  106 gatcggtttatttgaaaatacaattgaaaaaatttat-attctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    ||||||||| ||||||||||||||| ||||||  | | ||||||||||||||| |||| ||  |||||||||||||||    
T  53392769 gatcggtttgtttgaaaatacaattaaaaaaaaatcttattctcacaaatttgtatttcatgcatacaacatattcaa 53392846  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 28200119 - 28200046
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacata 177  Q
    |||||||||||||||||||||| |||| ||||| || ||||||||||||||||| |||| ||| ||||||||||    
T  28200119 ttgatcggtttatttgaaaatagaattaaaaaagttcatattctcacaaatttgtatttcatacatacaacata 28200046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 38607623 - 38607571
Alignment:
Q  110 ggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  38607623 ggtttatttgaaaatgcaattaaaaaaattcatattctcacaaatttgcattt 38607571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 3919492 - 3919570
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    ||||||||||| || |||||||||||| |||||||| ||||| ||||||||||| | || || ||||||||||| ||||    
T  3919492 ttgatcggtttgttcgaaaatacaattaaaaaaattcatattttcacaaatttgtagtttatgtatacaacatactcaa 3919570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 33036665 - 33036743
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    |||||| |||| ||||||||||||||| |||| ||| ||||| ||||||||||| |||| ||| |||||||||| ||||    
T  33036665 ttgatcagtttgtttgaaaatacaattaaaaatattcatattttcacaaatttgtattttatacatacaacatactcaa 33036743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 44018571 - 44018629
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||||||||| ||||||||||||||| |||||||| |||||  |||||||||| ||||    
T  44018571 ttgatcggtttgtttgaaaatacaattaaaaaaattcatatttacacaaatttgtattt 44018629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 33221128 - 33221182
Alignment:
Q  107 atcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    |||||||| ||||||||||||||| |||||||| | ||||||||||||||| ||||    
T  33221128 atcggtttgtttgaaaatacaatt-aaaaaattcaaattctcacaaatttgtattt 33221182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 31112210 - 31112156
Alignment:
Q  99 tttgattgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaa 153  Q
    |||| |||||| |||||||| ||||| ||||| |||||||| |||||||||||||    
T  31112210 tttggttgatctgtttatttaaaaatgcaattaaaaaaattcatattctcacaaa 31112156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 36009723 - 36009667
Alignment:
Q  99 tttgattgatcggtttatttgaaaatacaatt--gaaaaaatttatattctcacaaa 153  Q
    |||| ||||||||||||||| |||||||||||   |||||||| |||||||||||||    
T  36009723 tttggttgatcggtttatttaaaaatacaattaaaaaaaaattcatattctcacaaa 36009667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 22847829 - 22847910
Alignment:
Q  99 tttgattgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    |||| ||||||||||| ||| |||||||||||  ||||||| ||||| ||||||||||  |||| ||  |||||||||| ||||    
T  22847829 tttggttgatcggtttgtttaaaaatacaatt--aaaaattcatattttcacaaatttttatttcatgcatacaacatactcaa 22847910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 22240976 - 22240918
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| ||||    
T  22240976 ttgataggtttatttgaaaatacaatttaaaaaatttatattctcactaatttgtattt 22240918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 26918105 - 26918181
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    ||||||||||| ||||||||||||||| |||||||  ||| | ||||||||||| |||| || ||||||||||||||||    
T  26918105 ttgatcggtttgtttgaaaatacaatt-aaaaaatccatagtttcacaaatttgtattt-atgtatacaacatattcaa 26918181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 35847820 - 35847766
Alignment:
Q  93 aatcaatttgattgatcggtttatttgaaaatacaattgaaaaaatttatattct 147  Q
    |||||||||| |||||| |||||||||||||||| ||| |||||||| |||||||    
T  35847820 aatcaatttggttgatcagtttatttgaaaataccattaaaaaaattcatattct 35847766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 779126 - 779200
Alignment:
Q  107 atcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    |||||||| ||||||||||||||| |||||||| ||||| ||||||||||| |||  ||  |||||||||| ||||    
T  779126 atcggtttgtttgaaaatacaatt-aaaaaattcatattttcacaaatttgtattgcatgcatacaacatactcaa 779200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 33231132 - 33231211
Alignment:
Q  104 ttgatcggtttatttgaaaatacaatt-gaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    ||||||||||| |||||||||||||||  |||||| ||||||| ||| ||||||| |||| ||  |||||||||| ||||    
T  33231132 ttgatcggtttgtttgaaaatacaattaaaaaaaaattatattttcagaaatttgtatttcatgcatacaacatactcaa 33231211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 27524512 - 27524443
Alignment:
Q  94 atcaatttgattgatcggtttatttgaaaatacaatt-gaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||||| | |||||||||||||||||||||| ||||  |||||||| | ||| ||||||||||| ||||    
T  27524512 atcaattcggttgatcggtttatttgaaaataaaattaaaaaaaattcaaattttcacaaatttgtattt 27524443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 30553729 - 30553806
Alignment:
Q  99 tttgattgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacat 176  Q
    |||| ||| ||| ||| ||| ||||||||||| ||||||| |||||| ||||||||||| |||| ||  |||||||||    
T  30553729 tttggttggtcgatttgtttaaaaatacaattaaaaaaatctatattttcacaaatttgtatttcatgcatacaacat 30553806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 44681620 - 44681697
Alignment:
Q  106 gatcggtttatttgaaaatacaatt-gaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    ||||||||| |||||||||||||||  |||||| | ||||| ||||||||||| |||| ||  |||||||||| ||||    
T  44681620 gatcggtttgtttgaaaatacaattaaaaaaaaatcatattttcacaaatttgtatttcatgcatacaacatactcaa 44681697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 46893132 - 46893060
Alignment:
Q  110 ggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    ||||| ||||||||||||||| || ||||| ||||| |||||||||||  ||| ||  |||||||||| ||||    
T  46893132 ggtttgtttgaaaatacaattaaataaattcatattttcacaaatttgtttttcatgcatacaacatactcaa 46893060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 11846801 - 11846729
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacat 176  Q
    ||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||| |||| ||  |||||||||    
T  11846801 ttgatcggtttgtttgaaaatacaattaaaaaaattcatattttcacaaatttgtatttcatgcatacaacat 11846729  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 7176111 - 7176194
Alignment:
Q  99 tttgattgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    |||| ||||||||||| ||||||| ||| ||| |||||||| ||||| |||||||||||||||| ||  |||||||||| ||||    
T  7176111 tttggttgatcggtttgtttgaaagtactatttaaaaaattcatattttcacaaatttgcatttcatgcatacaacatactcaa 7176194  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 11971973 - 11971900
Alignment:
Q  104 ttgatcggtttatttgaaaatacaatt-gaaaaaatttatattctcacaaatttgcatttgatatatacaacat 176  Q
    ||||||||||| |||||||||||||||  |||||||||||||| ||||||||||| |||| ||  |||||||||    
T  11971973 ttgatcggtttgtttgaaaatacaattaaaaaaaatttatattttcacaaatttgtatttcatgcatacaacat 11971900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 26880342 - 26880285
Alignment:
Q  105 tgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||| ||||||||||||||| |||| |||||||| ||||||||||||||||| ||||    
T  26880342 tgatcagtttatttgaaaatagaattaaaaaaattcatattctcacaaatttgtattt 26880285  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 20722967 - 20722885
Alignment:
Q  94 atcaatttgattgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacata 177  Q
    ||||||| | |||||| ||||||||||||||| |||| |||||||| ||||| ||||||| ||| |||| ||  ||||||||||    
T  20722967 atcaattcggttgatcagtttatttgaaaatagaatt-aaaaaattcatattgtcacaaacttgtatttcatgcatacaacata 20722885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 1148039 - 1147981
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    |||||||||||||||||||||| |||  || ||| | ||||||||||||||||| ||||    
T  1148039 ttgatcggtttatttgaaaataaaataaaataaactcatattctcacaaatttgtattt 1147981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 32613532 - 32613604
Alignment:
Q  110 ggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    ||||| ||||||||||||| | ||||||| |||||| | ||||||||| |||| ||  |||||||||| ||||    
T  32613532 ggtttgtttgaaaatacaactaaaaaaatctatatttttacaaatttgtatttcattcatacaacatactcaa 32613604  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 9505591 - 9505513
Alignment:
Q  103 attgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    ||||||||||||  |||||||||||||| |||||||| ||||| ||||||||||| |||| || ||||||||||| ||||    
T  9505591 attgatcggtttgattgaaaatacaatt-aaaaaattcatattttcacaaatttgtatttcatgtatacaacatactcaa 9505513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 25807817 - 25807870
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttg 157  Q
    |||||| |||||||||||||||||||| |||||||||  |||||||||||||||    
T  25807817 ttgatcagtttatttgaaaatacaattaaaaaaatttcaattctcacaaatttg 25807870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 25343643 - 25343702
Alignment:
Q  104 ttgatcggtttatttgaaaatacaatt-gaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||||||||||||||||||||| |||  |||||||| ||||||||||||||||| ||||    
T  25343643 ttgatcggtttatttgaaaatactattaaaaaaaattcatattctcacaaatttgtattt 25343702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 25654393 - 25654452
Alignment:
Q  104 ttgatcggtttatttgaaaatacaatt-gaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||||||||||||||||||||| |||  |||||||| ||||||||||||||||| ||||    
T  25654393 ttgatcggtttatttgaaaatactattaaaaaaaattcatattctcacaaatttgtattt 25654452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 35949544 - 35949490
Alignment:
Q  99 tttgattgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaa 153  Q
    |||| ||||| ||||||||| ||||||||||| |||||||| |||||||||||||    
T  35949544 tttggttgattggtttatttaaaaatacaattaaaaaaattcatattctcacaaa 35949490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 32322363 - 32322284
Alignment:
Q  103 attgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    |||||||||||| ||||||||||||||| ||||||   ||||| |||||||||||  ||| ||  |||||||||| ||||    
T  32322363 attgatcggtttgtttgaaaatacaattaaaaaaaacaatattttcacaaatttgtttttcatgcatacaacatactcaa 32322284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 3767288 - 3767341
Alignment:
Q  108 tcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||||| ||||||||||||||| |||||||| ||||| ||||||||||| ||||    
T  3767288 tcggtttgtttgaaaatacaatt-aaaaaattcatattttcacaaatttgtattt 3767341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 49124775 - 49124695
Alignment:
Q  102 gattgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    |||||||  |||| |||||||||||||||  ||||||  ||||| |||||||||||||||| ||  |||||||||||||||    
T  49124775 gattgattagtttgtttgaaaatacaattacaaaaatccatattttcacaaatttgcatttcatgcatacaacatattcaa 49124695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 46264863 - 46264921
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||| ||||||||| ||||||||||| |||||||| | ||||||||||||||| ||||    
T  46264863 ttgattggtttatttaaaaatacaattaaaaaaattcacattctcacaaatttgtattt 46264921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 19601802 - 19601862
Alignment:
Q  102 gattgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    |||||||| ||||  |||||||||||||| |||||||| ||||| ||||||||||| ||||    
T  19601802 gattgatcagtttgcttgaaaatacaattaaaaaaattcatattgtcacaaatttgtattt 19601862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 25544833 - 25544908
Alignment:
Q  106 gatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    |||| |||| ||||||||||||||| |||||||| ||||| ||||||||||| |||| ||  |||||||||| ||||    
T  25544833 gatcagtttgtttgaaaatacaatt-aaaaaattcatattttcacaaatttgtatttcatgcatacaacatactcaa 25544908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 11726998 - 11727045
Alignment:
Q  106 gatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaa 153  Q
    |||| |||||||| ||||||||||| |||||||| |||||||||||||    
T  11726998 gatcagtttatttaaaaatacaattaaaaaaattcatattctcacaaa 11727045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 45595894 - 45595812
Alignment:
Q  99 tttgattgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaatttgcatttgatatatacaacatattcaa 182  Q
    |||| |||||||||||  |||||||||||||| |||||||| ||||| ||||||||||| | || || | ||||||||| ||||    
T  45595894 tttggttgatcggtttggttgaaaatacaatt-aaaaaattaatattttcacaaatttgtacttcatgtctacaacatactcaa 45595812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 22331491 - 22331537
Alignment:
Q  116 tttgaaaatacaattgaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||||||||||||| ||||||||  |||||||| ||||||||||||    
T  22331491 tttgaaaatacaattaaaaaaattcgtattctcataaatttgcattt 22331537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 34336 - 34277
Alignment:
Q  104 ttgatcggtttatttgaaaatacaatt-gaaaaaatttatattctcacaaatttgcattt 162  Q
    ||||||||||||||||||||||| |||  |||||||| ||||||||||||||||| ||||    
T  34336 ttgatcggtttatttgaaaatactattaaaaaaaattcatattctcacaaatttgtattt 34277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1335
Description:

Target: scaffold1335; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 443 - 497
Alignment:
Q  93 aatcaatttgattgatcggtttatttgaaaatacaattgaaaaaatttatattct 147  Q
    |||||||||| |||||| |||||||||||||||| ||| |||||||| |||||||    
T  443 aatcaatttggttgatcagtttatttgaaaataccattaaaaaaattcatattct 497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 4407279 - 4407328
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaa 153  Q
    |||||| |||||||||||||||||||| ||||| || |||||||||||||    
T  4407279 ttgatcagtttatttgaaaatacaattaaaaaatttcatattctcacaaa 4407328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 12069879 - 12069928
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaa 153  Q
    ||||||||||| ||| ||||||||||| |||||||| |||||||||||||    
T  12069879 ttgatcggtttgtttaaaaatacaattaaaaaaattaatattctcacaaa 12069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 18461714 - 18461669
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctca 149  Q
    ||||||||||||||| ||||||||||| |||||||| |||||||||    
T  18461714 ttgatcggtttatttaaaaatacaattaaaaaaattcatattctca 18461669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 11620653 - 11620604
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaa 153  Q
    |||||| |||||||| ||||||||||| || ||||| |||||||||||||    
T  11620653 ttgatcagtttatttaaaaatacaattaaacaaattcatattctcacaaa 11620604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 6852 - 6800
Alignment:
Q  104 ttgatcggtttatttgaaaatacaattgaaaaaatttatattctcacaaattt 156  Q
    ||||||| ||| ||||||||||||||| |||||||  ||||| ||||||||||    
T  6852 ttgatcgatttgtttgaaaatacaattaaaaaaatccatattttcacaaattt 6800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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