View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_low_84 (Length: 265)
Name: NF2324_low_84
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_84 |
 | |
|
| [»] scaffold0468 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 43183322 - 43183066
Alignment:
| Q |
1 |
taagagattcacttgaagttataaattttggtgtcagcttagcattaaaggaagttagtgttcatatgctaactaaccccaatgaattgttactcatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43183322 |
taagagattcacttgaagttataaatttgggtgtcagcttagcattaaaggaagttagtgttcatatgctaactaaccccaatgaattgttactcatttg |
43183223 |
T |
|
| Q |
101 |
ttcgagttaagatcccctaatttctctctatttatgatcttttatatttcttctatttgaaaagatgaagacacaaacaagttttaaaaaatatataaaa |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||| |
|
|
| T |
43183222 |
tt-gagttaagatcccctaatttctctccatttatgatcttttatatttcttctatttgaaaagatgaagacacaaataaattttaaaaaaaatataaaa |
43183124 |
T |
|
| Q |
201 |
taattaatgatggtgtgactcgcttaaagatatgattctttgtttatgtgttcatctc |
258 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
43183123 |
tgattgatgatggtgtgactcgcttaaagatatgactctttgtttatgtgtccatctc |
43183066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 13324874 - 13324939
Alignment:
| Q |
145 |
tatttcttctatttgaaaagatgaagacacaaacaagttttaaaaaatatataaaataattaatgatggtg |
215 |
Q |
| |
|
|||||||| ||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
13324874 |
tatttctttcatttgaagagataaagacacaa-----ttttaaaaaaaatataaaataattaatgatggtg |
13324939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 30857770 - 30857732
Alignment:
| Q |
180 |
agttttaaaaaatatataaaataattaatgatggtgtga |
218 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
30857770 |
agtttgaaaaaaaatataaaataattaatgatggtgtga |
30857732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 42719204 - 42719147
Alignment:
| Q |
155 |
atttgaaaagatgaagacacaaacaagttttaaaaaatatataaaataattaatgatg |
212 |
Q |
| |
|
||||||| |||| |||||||||| || ||| |||| ||||||||||||||||||||| |
|
|
| T |
42719204 |
atttgaatagataaagacacaaagaaatttaaaaatgtatataaaataattaatgatg |
42719147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 34597405 - 34597337
Alignment:
| Q |
146 |
atttcttctatttgaaaagatgaagacacaaacaagttttaaaaaatatataaaataattaatgatggtg |
215 |
Q |
| |
|
||||||| |||||| | || | |||||||||| |||||| |||||| |||||||||||||||| |||||| |
|
|
| T |
34597405 |
atttcttttatttggagagttaaagacacaaataagtttgaaaaaa-atataaaataattaataatggtg |
34597337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 5538 - 5625
Alignment:
| Q |
124 |
ctctctatttatgatcttttatatttcttctatttgaaaagatgaagacacaaacaagttttaaaaaatatataaaataattaatgatg |
212 |
Q |
| |
|
||||| |||||||||| | | |||||||| ||||| | |||| |||||| ||| |||||| |||||| ||||||||||||||||||| |
|
|
| T |
5538 |
ctctccatttatgatcctcttcatttcttccatttggagagataaagacataaagaagtttgaaaaaag-tataaaataattaatgatg |
5625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 26496 - 26585
Alignment:
| Q |
124 |
ctctctatttatgatcttttatatttcttctatttgaaaagatgaagacacaaacaagttttaaaaaatatataaaataattaatgatggtg |
215 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||| |||| |||| || | ||||| |||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
26496 |
ctctcaatttatgatctttcccatttcttttatctgaagagataaaaatacaaaaaagttt--aaaaaaatataaaataatcaatgatggtg |
26585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University