View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_85 (Length: 262)
Name: NF2324_low_85
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_85 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 30113730 - 30113557
Alignment:
| Q |
8 |
agataatactcattttttcaaagatgcttgggttatgcattcaaatcctctacggctgctgcatagtagactaaagtgaatgattcattttttggtgaca |
107 |
Q |
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| T |
30113730 |
agattatactcattttttcaaagatgcttgggttatgcattcaaatcctctacggctgctgcatagtagactaaagtgaatgattaattttttggtgaca |
30113631 |
T |
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| Q |
108 |
attttattttgaattgatcatgtaaaattaattttagttcaaaatgagttcaa-tagagttattgtttccacgt |
180 |
Q |
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| T |
30113630 |
attttattttgaattgatcatgtaaaattaattttagttcaaaatgagttcaattagagttattgtttccacgt |
30113557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 30113517 - 30113475
Alignment:
| Q |
220 |
catgtttaaagtcaatcaattacaattgacatgtttcatcaaa |
262 |
Q |
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| T |
30113517 |
catgtttaaagtcaatcaattacaattgacatgtttcaccaaa |
30113475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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