View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_low_86 (Length: 258)
Name: NF2324_low_86
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_86 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30817450 - 30817486
Alignment:
| Q |
1 |
gtatgaactttcttttcttgtaaagaaaacaatgaca |
37 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30817450 |
gtatggactttcttttcttgtaaagaaaacaatgaca |
30817486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 30817979 - 30818017
Alignment:
| Q |
54 |
aaagccttgtcatgaataaacaagcaaaatgaaagaaca |
92 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
30817979 |
aaagccttgtcatgaataaaccagcaacatgaaagaaca |
30818017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University