View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_9 (Length: 654)
Name: NF2324_low_9
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 136 - 642
Target Start/End: Complemental strand, 27305815 - 27305314
Alignment:
| Q |
136 |
ccttaaccaattaaattcttcccgataaattttgagtgtgattttaatttgatgctaatccttaagtgccaatttaatgagtttgagtttttcatttaga |
235 |
Q |
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| T |
27305815 |
ccttaaccaatttaattcttcccgataaattttgagtgtgattttaatttgattctaatccttaagtgccaatttaatgagtttgagtttttcttttgaa |
27305716 |
T |
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| Q |
236 |
acaaatccaccccaccgatcaacttgaaaagaatcccatttctcctgaacaaattgttaatactccggaacatcggcccaacatttcaacattcgagatg |
335 |
Q |
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| T |
27305715 |
acaaatccactccacccatcaac----aaagaatcccatttctcccgaacaaattgtttataccccagaacatcggcccaatatttcaacatttgagatg |
27305620 |
T |
|
| Q |
336 |
gtctagggtcccaattctcctcatcaacggataatgtaatcaggaggtggtccgtcaaccctctaatgtgtaccacctgaatacagtttgaccaagtcaa |
435 |
Q |
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|||| || ||||||||||||||||||| |||| ||||||||| |||||| | |||||||||||||||| |||| ||||||||||||| ||| ||||| |
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| T |
27305619 |
-tctaaggctccaattctcctcatcaacgaataacgtaatcaggcagtggtctgacaaccctctaatgtgtgccacttgaatacagtttggccatgtcaa |
27305521 |
T |
|
| Q |
436 |
acaccaatcttatgacaacaagaatctatccaaacgacttatagaataactcatcaccgcgataccaattgaaacgacggcccacccaacggaagatcaa |
535 |
Q |
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| T |
27305520 |
acaccaatcttataacaacaagaatctatccaaacgacttatagaataactcattaccgtgataccaattgaaacgacggcccacccaacggtagatcaa |
27305421 |
T |
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| Q |
536 |
ccaacaaattatttcggtgaagcaataaactatataatcagtttaccaaatttgatcaagttccttaatgtacaaagttttcttgaacaagtcaacaaac |
635 |
Q |
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| T |
27305420 |
ccaacaaattatttcggtgaagcaataaactacataattagtttaccaaatttgatcaagttccttaatgtacaaagttttcttgaacaagtcaacaaat |
27305321 |
T |
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| Q |
636 |
ctatgct |
642 |
Q |
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||||||| |
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| T |
27305320 |
ctatgct |
27305314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 27305894 - 27305812
Alignment:
| Q |
29 |
cactcttgacaacaaatacaaatcagcagtaagaacatgcaattcgtccacttcagcctctagaagcaaagcattctcccctt |
111 |
Q |
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|||||||||| | |||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |
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| T |
27305894 |
cactcttgacgataaatacaaatcaaccgtaagaacatgcaattcccccacttcggcctctagaagcaaatcattctcccctt |
27305812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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