View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_90 (Length: 250)
Name: NF2324_low_90
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_90 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 39117754 - 39117514
Alignment:
| Q |
1 |
taaaatgaaacagttcacgccaaaaacaactgagaaaatcgggtcacggccagatgtacaagagtcttcgccattctatgtagcttgcatatatttgagc |
100 |
Q |
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| T |
39117754 |
taaaatgaaacagttcacgccaaaaacaactgagaaaatcgggtcacggccagatgtacaagagtcttcgccattctatgtagcttgcatatatttgagc |
39117655 |
T |
|
| Q |
101 |
aaacaactttgccactttgacagcagtgaaattggtcggcagcataccaaagtgtgaagcctttgagagtcgactgaccaccactaatatcactgtgtta |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
39117654 |
aaacaactttgcaactttgacagcagtgaaattggtcggcagcataccaaagtgtgaagcctttgagagtcgaccgaccaccactaatatcac--tgtta |
39117557 |
T |
|
| Q |
201 |
ttttgaaaagaagggagcccaccccctcggtcatttcatctca |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39117556 |
ttttgaaaagaagggagcccaccccctcggtcatttcatctca |
39117514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 38612568 - 38612802
Alignment:
| Q |
7 |
gaaacagttcacgccaaaaacaactgagaaaatcgggtcacggccagatgtacaagagtcttcgccattctatgtagcttgcatat-atttgagcaaaca |
105 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||| |||||| |||| ||||||||||| |||||| | |||| |
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| T |
38612568 |
gaaacagttcacgccaaaaacgactgagaaaatcgggtcacggtaagat--acatgagtctt-gccattttatgcagcttgcatatcatttgaacgaaca |
38612664 |
T |
|
| Q |
106 |
actttgccactttgacagcagtgaaattggtcggcagcataccaaagtgtgaagcctttgagagtcgactgaccaccactaatatcactgtgttattttg |
205 |
Q |
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| T |
38612665 |
actctgcaactttgacaacattgaaattgatcggcagtataccaaagtgtgaagcctttgagagtcgaccgaccaccactaatatcacagtgtgattttg |
38612764 |
T |
|
| Q |
206 |
aaaagaagggagcccaccccctcggtcatttcatctca |
243 |
Q |
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| T |
38612765 |
aaaagaagggagcccaccccctcgatcatttcatctca |
38612802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 39119898 - 39119769
Alignment:
| Q |
114 |
actttgacagcagtgaaattggtcggcagcataccaaagtgtgaagcctttgagagtcgactgaccaccactaatatcactgtgttattttgaaaagaag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39119898 |
actttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgaccgaccaccactaatatcactgtgttattttgaaaagaag |
39119799 |
T |
|
| Q |
214 |
ggagcccaccccctcggtcatttcatctca |
243 |
Q |
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|||||||||| || | ||||||||||||| |
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| T |
39119798 |
ggagcccaccaccccaatcatttcatctca |
39119769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 38611610 - 38611694
Alignment:
| Q |
7 |
gaaacagttcacgccaaaaacaactgagaaaa-tcgggtcacggccagatgtacaagagtcttcgccattctatgtagcttgcatat |
92 |
Q |
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||||||||| ||||||||||| |||||||||| ||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||| |
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| T |
38611610 |
gaaacagttaacgccaaaaacgactgagaaaaatcgggtcacggtcagat--acaagagtcttcgccgttccatgtagcttgcatat |
38611694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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