View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2324_low_97 (Length: 239)
Name: NF2324_low_97
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_97 |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 34320381 - 34320161
Alignment:
| Q |
19 |
aaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgt |
118 |
Q |
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| T |
34320381 |
aaagtatcgctccaatccatgtctttccattgcaatttgtcgggaaacaaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgt |
34320282 |
T |
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| Q |
119 |
ttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaag |
218 |
Q |
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| T |
34320281 |
ttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaag |
34320182 |
T |
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| Q |
219 |
ttgagataaagattttcgaag |
239 |
Q |
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||||||||||||||||||||| |
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| T |
34320181 |
ttgagataaagattttcgaag |
34320161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 34329289 - 34329075
Alignment:
| Q |
19 |
aaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgt |
118 |
Q |
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||||| || ||||||||||| ||||||||||||||||| || || |||||||||||||| | ||| ||| | ||||||| ||| | ||||| ||||||| |
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| T |
34329289 |
aaagtttcactccaatccatttctttccattgcaattcatccgggaacaaagggttcaacaatttttctatagggttttggaggacttctgatagtttgt |
34329190 |
T |
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| Q |
119 |
ttttgatctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaag |
218 |
Q |
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| T |
34329189 |
ttttgacatttgtgactagaaacggcacaccttgatcattacattcgacggtaattttatctttcaaccttccagcaaaaggataatatttggataaaag |
34329090 |
T |
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| Q |
219 |
ttgagataaagattt |
233 |
Q |
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| T |
34329089 |
ttgagataaagattt |
34329075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 34333267 - 34333175
Alignment:
| Q |
138 |
aaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaaga |
230 |
Q |
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||||||| |||||||||| |||||||| |||| || | |||||| || ||||| ||||| ||||||||| | |||| || |||||||||||| |
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| T |
34333267 |
aaatgacgcaccttgatcgttacattcgatggaaagctgatctttgaacctgcctgcaaaggggtagtatatggatagaatttgagataaaga |
34333175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 36633245 - 36633456
Alignment:
| Q |
28 |
ctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgtttttgatct |
127 |
Q |
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||||||||||||||||||||||| ||||| || || |||||||||||||| | ||| || ||||| |||| |||| ||||||||| |||||||| | || |
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| T |
36633245 |
ctccaatccatgtctttccattgtaattcatcagggaacaaagggttcaacaatttttcagtgggattttgaagaaactctgaaagattgttttttacct |
36633344 |
T |
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| Q |
128 |
ttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataa |
227 |
Q |
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||||||| |||||| |||||||||||||||| ||||||||||||||||||||||| | || ||||||||| | ||| |||||||||||||||||||||| |
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| T |
36633345 |
ttgtgacaaaaaataacacaccttgatcattgcattcaatggtaattttatctttaatcctaccagcaaaatgatagaatttagataaaagttgagataa |
36633444 |
T |
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| Q |
228 |
agattttcgaag |
239 |
Q |
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|||||||||||| |
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| T |
36633445 |
agattttcgaag |
36633456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 36622441 - 36622649
Alignment:
| Q |
28 |
ctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgtttttgatct |
127 |
Q |
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||||||||||| ||||||||||| ||||| || || ||||||||||| || | ||| || ||||| |||| | ||||||||||||||||||||| | || |
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| T |
36622441 |
ctccaatccatttctttccattgtaattcatcagggaacaaagggtttaacaatttttcagtgggattttgaacaatctctgaaagtttgttttttacct |
36622540 |
T |
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| Q |
128 |
ttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataa |
227 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||| | ||||||||||||| |||||||||||| |
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| T |
36622541 |
ttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcctaccagcaaaatgatagtatttagatagaagttgagataa |
36622640 |
T |
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| Q |
228 |
agattttcg |
236 |
Q |
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|||||||| |
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| T |
36622641 |
ggattttcg |
36622649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 36627678 - 36627889
Alignment:
| Q |
28 |
ctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgtttttgatct |
127 |
Q |
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||||||||||| ||||||||||| ||||| || || |||||||||||||| | ||| || || || |||| ||||||||||||||||||||||| |||| |
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| T |
36627678 |
ctccaatccatttctttccattgtaattcatcagggaacaaagggttcaacaatttttcagtaggattttgaagaatctctgaaagtttgttttttatct |
36627777 |
T |
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| Q |
128 |
ttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataa |
227 |
Q |
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||||||| ||||| |||| ||||| ||||||||||||||||||||| ||||||| | || ||||||||||| |||||||| |||| |||||||||||| |
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| T |
36627778 |
ttgtgactaaaaacaacaccccttggtcattacattcaatggtaattctatctttaatcctaccagcaaaaggatagtatttggatagaagttgagataa |
36627877 |
T |
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| Q |
228 |
agattttcgaag |
239 |
Q |
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||||||||||| |
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| T |
36627878 |
ggattttcgaag |
36627889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 235
Target Start/End: Original strand, 45306835 - 45307009
Alignment:
| Q |
61 |
ggaaacaaagggttcaatattttatctgtggggtttttgagaatctctgaaagtttgtttttgatctttgtgaccaaaaatgacacaccttgatcattac |
160 |
Q |
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|||||||||| ||||||| ||| |||| ||| |||| ||| || || || ||||| ||||| |||||||| || | ||| | ||||||||| || |||| |
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| T |
45306835 |
ggaaacaaagagttcaatgtttcctctgagggattttggaggatgtcggatagtttattttttatctttgtcactataaacgtcacaccttggtcgttac |
45306934 |
T |
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| Q |
161 |
attcaatggtaattttatcttttaatctgccagcaaaagggtagtatttagataaaagttgagataaagattttc |
235 |
Q |
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|||||||||||||||||||||| || || ||||| ||| ||||||||| |||| || ||||||||| ||||||| |
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| T |
45306935 |
attcaatggtaattttatctttcaacctaccagcgaaaatgtagtatttggatagaatttgagataaggattttc |
45307009 |
T |
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