View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2324_low_98 (Length: 239)
Name: NF2324_low_98
Description: NF2324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2324_low_98 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4574689 - 4574467
Alignment:
| Q |
1 |
actaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4574689 |
actaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcata |
4574590 |
T |
|
| Q |
101 |
tgtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4574589 |
tgtgctggagttccaatgttatgttggccatttttttcggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgata |
4574490 |
T |
|
| Q |
201 |
ctaatgtaaagagggaggaggtg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4574489 |
ctaatgtaaagagggaggaggtg |
4574467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4560887 - 4560669
Alignment:
| Q |
1 |
actaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4560887 |
actaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcata |
4560788 |
T |
|
| Q |
101 |
tgtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgata |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||| |
|
|
| T |
4560787 |
tgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatgaatggaagattggaaacgaaattgata |
4560688 |
T |
|
| Q |
201 |
ctaatgtaaagagggagga |
219 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
4560687 |
caaatgtaaagagggagga |
4560669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 4564090 - 4563870
Alignment:
| Q |
3 |
taatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatg |
102 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4564090 |
taattgcaagttggtgtccacaggagaaagtattgaaccacccttcaattggcggattcttgactcattgcggatggaactcaaccactgaaagcatatg |
4563991 |
T |
|
| Q |
103 |
tgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatact |
202 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| ||||||| ||| ||||| |||||||||||||||||| | |||||||||||| |
|
|
| T |
4563990 |
tgctggagttccaatgttgtgttggccattctttggtgatcagccaacaaactgtagacttatttacaatgaatgggagattgggatggaaatcgatacg |
4563891 |
T |
|
| Q |
203 |
aatgtaaagagggaggaggtg |
223 |
Q |
| |
|
||||||||||| || |||||| |
|
|
| T |
4563890 |
aatgtaaagagagaagaggtg |
4563870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 4602169 - 4601951
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4602169 |
ctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcgatcggcggattcttgactcattgtggatggaactcaaccactgaaagcatat |
4602070 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
|||||||||| || ||||| |||||||| | ||||||||| ||||||| |||| |||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
4602069 |
gtgctggagtgccgatgttgtgttggcctttttttgccgatcagccaacaaactgtagatttatttgtaatgaatgggagattggtatggaaatcgatac |
4601970 |
T |
|
| Q |
202 |
taatgtaaagagggaggag |
220 |
Q |
| |
|
||||| ||||| |||||| |
|
|
| T |
4601969 |
aaatgtgaagagagaggag |
4601951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 4626331 - 4626115
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||| ||||||| | |||| | ||||||||||| |||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
4626331 |
ctaatcgcaagctggtgtccgcaagagaaagtactgaaccatccttcaattggtggattcttaactcattgtggatggaactcaaccattgaaagcatat |
4626232 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
| ||||||||||||||| | ||||||||| | ||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
4626231 |
gcgctggagttccaatgctgtgttggccaaattttgctgatcagccaacaaattgtagatatatttgcaatgaatgggagattggaatggaaatcgatgc |
4626132 |
T |
|
| Q |
202 |
taatgtaaagagggagg |
218 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
4626131 |
taatgtgaagagggagg |
4626115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 4481073 - 4480862
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4481073 |
ctaatagcaagttggtgtccacaagagaaagttttgaaccacccttcaatcggcggattcttgactcattgcggatggaactcaaccactgaaagtgtat |
4480974 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
|||||||||| |||||||| ||||||||| | ||||||||| | ||| | ||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4480973 |
gtgctggagtgccaatgttgtgttggccattctttgccgatcagccacctaaccgtagaattatttgcaatgaatgggagattggactcgaaatcgatac |
4480874 |
T |
|
| Q |
202 |
taatgtaaagag |
213 |
Q |
| |
|
||||| ||||| |
|
|
| T |
4480873 |
caatgtgaagag |
4480862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 4617402 - 4617184
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
4617402 |
ctaatagcaagttggtgtccacaagacaaagtgttgaaccacccttcaatcggaggattcttgactcattgcggatggaattcaaccactgaaagtatat |
4617303 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
| |||||||| |||||||| ||||||||| | || |||||| || |||| |||| |||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
4617302 |
gcgctggagtgccaatgttgtgttggccattttttgccgaccagccaacagactgtagatttatttgtaatgaatgggagattggtatggaaatcgatac |
4617203 |
T |
|
| Q |
202 |
taatgtaaagagggaggag |
220 |
Q |
| |
|
||||| ||||| |||||| |
|
|
| T |
4617202 |
gaatgtgaagagagaggag |
4617184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 4266917 - 4267129
Alignment:
| Q |
1 |
actaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcata |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4266917 |
actaatagcaagttggtgtccacaagataaagtgttgaaccacccttcgattggtggattcttgactcattgcggatggaattcaaccactgaaagcata |
4267016 |
T |
|
| Q |
101 |
tgtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgata |
200 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||||||| ||||||| |||| ||||||| ||||||||||||||||| |||||| ||| |
|
|
| T |
4267017 |
tgtgctggagtgccaatgttgtgttggccattctttggtgatcagccaacaaactgtagatttatttgctatgaatgggagattggactcgaaatcaata |
4267116 |
T |
|
| Q |
201 |
ctaatgtaaagag |
213 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
4267117 |
caaatgtgaagag |
4267129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 4613482 - 4613690
Alignment:
| Q |
14 |
tggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttc |
113 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||| |||| | || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4613482 |
tggtgtcctcaagagcaagtattaaaccacccttcaattggcggattcttgactcattgtggatggaactcaaccactgaaagcatatgtgctggagtgc |
4613581 |
T |
|
| Q |
114 |
caatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgtaaagag |
213 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||| || || ||||| ||||| |
|
|
| T |
4613582 |
caatgttgtgttggccatttttcgcggatcagccagcaaactgcagatatatatgcaatgaatgggaaattgggatggaaattgacaccaatgtgaagag |
4613681 |
T |
|
| Q |
214 |
ggaggaggt |
222 |
Q |
| |
|
|| ||||| |
|
|
| T |
4613682 |
agatgaggt |
4613690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 4514873 - 4515093
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||| | || |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4514873 |
ctaatagcaagttggtgtccacaagagaaagttttgaaccacccttcaattggcggattcttgactcattgcggatggaactcaaccactgagagcatat |
4514972 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
| |||||||| |||||| | ||||||| | ||||| ||| ||||||| |||| |||||||||||||||||||||||| | |||||||||| |
|
|
| T |
4514973 |
gcgctggagtgccaatgctttgttggcaattctttggtgatcaaccaacaaactgtagatttatttgcaatgaatgggagattgggatcgaaatcgatat |
4515072 |
T |
|
| Q |
202 |
taatgtaaagagggaggaggt |
222 |
Q |
| |
|
||||| ||||| |||||||| |
|
|
| T |
4515073 |
gaatgtgaagagagaggaggt |
4515093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 4592599 - 4592390
Alignment:
| Q |
14 |
tggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttc |
113 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
4592599 |
tggtgtcctcaagagcaagtattaaaccacccttcaattggtggattcttgactcattgtggatggaactcaaccactgaaagtatatgtgctggaattc |
4592500 |
T |
|
| Q |
114 |
caatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgtaaagag |
213 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||| ||| ||||| |||||||||||||||||| | |||||| ||||| ||||||||||| |
|
|
| T |
4592499 |
caatgttgtgttggccattctttagtgatcagccaacaaactgtagacttatttacaatgaatgggagattgggatggaaattgatacgaatgtaaagag |
4592400 |
T |
|
| Q |
214 |
ggaggaggtg |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
4592399 |
agaggaggtg |
4592390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 4557493 - 4557285
Alignment:
| Q |
14 |
tggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttc |
113 |
Q |
| |
|
||||| || |||||| ||||||| ||||| | |||| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4557493 |
tggtgcccgcaagagcaagtattaaaccatccttcaattggtggattcttgactcattgtggatggaactcaaccactgaaagcatatctgctggagttc |
4557394 |
T |
|
| Q |
114 |
caatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgtaaagag |
213 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||| | |||||| || || ||||| ||||| |
|
|
| T |
4557393 |
caatgttgtgttggccattttttgctgatcagccagcaaactgcagatatatttgcaatacatgggagattggcatggaaattgacaccaatgtgaagag |
4557294 |
T |
|
| Q |
214 |
ggaggaggt |
222 |
Q |
| |
|
|| ||||| |
|
|
| T |
4557293 |
agatgaggt |
4557285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 4586006 - 4585795
Alignment:
| Q |
12 |
gttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagt |
111 |
Q |
| |
|
||||||| || |||||| ||||||||||||||| |||| | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4586006 |
gttggtgcccgcaagagcaagtattgaaccacccttcaattggtggattcttgactcactgtggatggaactcaaccactgaaagcatatgtgctggagt |
4585907 |
T |
|
| Q |
112 |
tccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgtaaag |
211 |
Q |
| |
|
|||||||| ||||||||| | ||||||||| ||||||| ||| |||||||||||||||||||||||| | |||| | || || ||||| ||| |
|
|
| T |
4585906 |
gccaatgttgtgttggccattcattgctgatcagccaacaaactgtagaattatttgcaatgaatgggagattgggatggaagttgacaccaatgtgaag |
4585807 |
T |
|
| Q |
212 |
agggaggaggtg |
223 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
4585806 |
agagaggaggtg |
4585795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 4470171 - 4469985
Alignment:
| Q |
14 |
tggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttc |
113 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
4470171 |
tggtgtcctcaagagcaagtactgaaccacccttcaatcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgcgctggagtgc |
4470072 |
T |
|
| Q |
114 |
caatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgata |
200 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||| || |||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4470071 |
caatgttgtgttggccattctttggtgatcagctagcaaattgtagatttatttgcaatgaatgggagattggacttgaaatcgata |
4469985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 4461503 - 4461282
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||| ||||||||| |||| | |||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
4461503 |
ctaatagcaagctggtgtccgcaagagcaagtactgaaccacccttcaattggtggattcttgactcattgtggatggaattcaaccactgaaagcatat |
4461404 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
|||||||||| || ||||| ||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
4461403 |
gtgctggagtgccgatgttgtgttggccattctttggtgatcagccagcaaactgtagatttatttgcaacaaatgggagattggacttgaaatcgataa |
4461304 |
T |
|
| Q |
202 |
taatgtaaagagggaggaggtg |
223 |
Q |
| |
|
|||| |||||||| |||||| |
|
|
| T |
4461303 |
agatgtgaagagggatgaggtg |
4461282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 4598545 - 4598330
Alignment:
| Q |
8 |
gcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctg |
107 |
Q |
| |
|
||||| ||||||| |||||| ||||||| ||||| | |||| | ||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
4598545 |
gcaagctggtgtctgcaagagcaagtattaaaccatccttcaattggtggattcttaactcattgcggatggaactcaaccactgaaagtatatgtgccg |
4598446 |
T |
|
| Q |
108 |
gagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgt |
207 |
Q |
| |
|
|||| |||||||| ||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
4598445 |
gagtgccaatgttgtgttgtccctttttcgcggatcagcaagccaactgcagatatatttgcaatgaatgggagattggaatcaaaattgaaactaatgt |
4598346 |
T |
|
| Q |
208 |
aaagagggaggaggtg |
223 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
4598345 |
gaagagagaggaggtg |
4598330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 4579800 - 4579591
Alignment:
| Q |
14 |
tggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttc |
113 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||| |||| | |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
4579800 |
tggtgtccgcaagagcaagtactgaaccacccttcaattggtggattcttgactcattgcggatggaactcaatcactgaaagcatatctgctggagttc |
4579701 |
T |
|
| Q |
114 |
caatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgtaaagag |
213 |
Q |
| |
|
||||||| ||||||||| | ||||| |||| || |||||||||| | |||||| |||| | ||||||| |||||||| |||||||| ||||| |
|
|
| T |
4579700 |
caatgttgtgttggccatttttcgctgatcacccagtaagctgcagatatttatgcaatacatggaaaattggaattgaaatcgacactaatgtgaagag |
4579601 |
T |
|
| Q |
214 |
ggaggaggtg |
223 |
Q |
| |
|
||||||||| |
|
|
| T |
4579600 |
agaggaggtg |
4579591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 4622522 - 4622301
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||| | ||||||| | || | |||||||||||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
4622522 |
ctaatcgcaggttggtgtccacaagaggaagtacttaaccaccctgcaattggtggattcttgactcattgtggatggaattcaaccaccgaaagcatat |
4622423 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
||||||||||| ||||| | ||||||||| | ||||||||| ||||||| |||||||| |||||| |||||||||||||| |||||| |||| |
|
|
| T |
4622422 |
gtgctggagtttcaatgctgtgttggccatttttcgctgatcagccaacaaactgtagatatatctgcaattcatgggagattggaatcgaaatcaatac |
4622323 |
T |
|
| Q |
202 |
taatgtaaagagggaggaggtg |
223 |
Q |
| |
|
|||||| || || ||||||||| |
|
|
| T |
4622322 |
taatgtgaaaagagaggaggtg |
4622301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 4457973 - 4457753
Alignment:
| Q |
3 |
taatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatg |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4457973 |
taatagcaagttggtgtccacaagataaagtgttgaaccacccttcaatcggaggattcttgactcattgtggatgaaactcaaccactgaaagcatatg |
4457874 |
T |
|
| Q |
103 |
tgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatact |
202 |
Q |
| |
|
|||||||| |||||| | |||||||| ||| ||||| ||| || |||| ||||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
4457873 |
cgctggagtgccaatgctgcgttggccattctttggtgataagccaacaagttgtagatttatttgcaatgaatgagagattgggatggaaatcgataca |
4457774 |
T |
|
| Q |
203 |
aatgtaaagagggaggaggtg |
223 |
Q |
| |
|
||||| ||||| || |||||| |
|
|
| T |
4457773 |
aatgtgaagagagatgaggtg |
4457753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 4506234 - 4506032
Alignment:
| Q |
5 |
atagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtg |
104 |
Q |
| |
|
|||||||| |||||| ||||||||||||| || || |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4506234 |
atagcaagctggtgttcacaagagaaagtgttaaatcacccttcaattggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgcg |
4506135 |
T |
|
| Q |
105 |
ctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaa |
204 |
Q |
| |
|
||||||| |||||| | |||||||| ||||| ||| ||||||| |||| |||||||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
4506134 |
ctggagtgccaatgctgtgttggccgttctttggtgatcaaccaacaaactgtagatttatttgcaatgaattggagattggaatcgaaattgatactaa |
4506035 |
T |
|
| Q |
205 |
tgt |
207 |
Q |
| |
|
||| |
|
|
| T |
4506034 |
tgt |
4506032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 4256372 - 4256585
Alignment:
| Q |
11 |
agttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggag |
110 |
Q |
| |
|
||||||||||| |||||| ||||| |||||||| |||||| |||||||||||||||||||| |||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
4256372 |
agttggtgtccgcaagagcaagtactgaaccactcttcagttggtggattcttgactcattgaggatggaactcaaccattgaaagcatttgtgccggag |
4256471 |
T |
|
| Q |
111 |
ttccaatgttatgttggccannnnnnncggatcag-ccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgtaa |
209 |
Q |
| |
|
|||||||||| ||||||||| | |||||| ||| ||||||| |||| |||||| | |||||||||||||||| |||||| |||||||||| | |
|
|
| T |
4256472 |
ttccaatgttgtgttggccattttttgctgatcagaccaacaaactgtagatttatttgtagcgaatgggagattggaattgaaatcaatactaatgtga |
4256571 |
T |
|
| Q |
210 |
agagggaggaggtg |
223 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
4256572 |
agagagatgaggtg |
4256585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 4516700 - 4516480
Alignment:
| Q |
3 |
taatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatg |
102 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |||||||| | |||||| || ||||||||||||||||| ||||||||||| || | |||||||| || |
|
|
| T |
4516700 |
taatagcaagctggtgtccgcaagagaaagtgttgaaccatccttcagttggaggattcttgactcattgtggatggaactccacaatggaaagcatctg |
4516601 |
T |
|
| Q |
103 |
tgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatact |
202 |
Q |
| |
|
||| ||||| |||||||| |||||||| | || |||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
4516600 |
tgccggagtaccaatgttgtgttggcctttttttgctgagcagccaacaaattgcagatatatttgcaatgaatgggagattggagcagaaattgatacc |
4516501 |
T |
|
| Q |
203 |
aatgtaaagagggaggaggtg |
223 |
Q |
| |
|
||||| ||||| ||||||||| |
|
|
| T |
4516500 |
aatgtgaagagagaggaggtg |
4516480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 4571331 - 4571141
Alignment:
| Q |
23 |
caagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttat |
122 |
Q |
| |
|
|||||||||||||||||||| | |||| | ||||| ||||||||||| || |||||||||||||| || |||||||||| | |||||||||||||||| | |
|
|
| T |
4571331 |
caagagaaagtattgaaccatccttcaattggtggtttcttgactcactgtggatggaactcaacgaccgaaagcatatctactggagttccaatgttgt |
4571232 |
T |
|
| Q |
123 |
gttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgtaaagag |
213 |
Q |
| |
|
||| |||| | ||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
4571231 |
gttagccattttttgctgatcagccagcaaactgtagatatatctgcaatacatgggagattggaatcgaaatcgatactaatgtgaagag |
4571141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 4259918 - 4260111
Alignment:
| Q |
14 |
tggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttc |
113 |
Q |
| |
|
|||||||| |||||| ||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| | ||||| |
|
|
| T |
4259918 |
tggtgtccgcaagagcaagtactgaaccactcttcagttggtggattcttaactcattgcggatggaactcaaccattgaaagcatttgtgccgaagttc |
4260017 |
T |
|
| Q |
114 |
caatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgt |
207 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||||| |||| |||||| || |||||||||||||||| ||||| |||||||||| |
|
|
| T |
4260018 |
caatgttgtgttggccattttttgctgatcagccaacaaactgtagatttatttgtaacgaatgggagattggaattgaaattaatactaatgt |
4260111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 4504153 - 4504277
Alignment:
| Q |
6 |
tagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgc |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| |||| |||| ||||||||||||||||| ||||||||||||||||||||||| | ||||| |
|
|
| T |
4504153 |
tagcaagttggtgtccacaagataaagtgttgaaccacccttcaatcggaggattcttgactcattgtggatggaactcaaccactgaaagtgtttgtgc |
4504252 |
T |
|
| Q |
106 |
tggagttccaatgttatgttggcca |
130 |
Q |
| |
|
|||||| |||||||| ||||||||| |
|
|
| T |
4504253 |
tggagtgccaatgttgtgttggcca |
4504277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 4490106 - 4490235
Alignment:
| Q |
1 |
actaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||| |||| | |||||||||||||||||||| ||||||||||||| || || || ||| |
|
|
| T |
4490106 |
actaatagcaagttggtgtccacaagagaaggtattgaatcacccttcaattggtggattcttgactcattgtggatggaactcaatcatggagagtata |
4490205 |
T |
|
| Q |
101 |
tgtgctggagttccaatgttatgttggcca |
130 |
Q |
| |
|
||||||||||| |||||||| ||||||||| |
|
|
| T |
4490206 |
tgtgctggagtgccaatgttgtgttggcca |
4490235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 3172121 - 3171901
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| | |||| | || |||||||||||||| |||||||||||||||||||| ||||| ||| |
|
|
| T |
3172121 |
ctaatagcaagttggtgtccgcaagagaaagtgttgaaccatccttcaattggcggattcttgactcactgcggatggaactcaaccacggaaagtgtat |
3172022 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
|||||||| | |||||||| ||| ||||| | ||||| ||| | ||| | ||| ||||||| | |||||| ||||||| | |||||| ||||| |
|
|
| T |
3172021 |
gtgctggaatgccaatgttgtgtaggccattttttgctgatcaaccacctaacagtagaattatttgccaagaatggaagattgggatggaaattgatac |
3171922 |
T |
|
| Q |
202 |
taatgtaaagagggaggaggt |
222 |
Q |
| |
|
||||||||||| | |||||| |
|
|
| T |
3171921 |
caatgtaaagagaggggaggt |
3171901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 4493335 - 4493137
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
||||| || ||||||||||||||||||||| | ||||||||| ||| | |||||||||||||||||||| |||||||||||||| || ||| ||||| |
|
|
| T |
4493335 |
ctaattgctagttggtgtccacaagagaaactgctgaaccaccattcgattggtggattcttgactcattgtggatggaactcaactaccaaaaacatat |
4493236 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgata |
200 |
Q |
| |
|
|||| ||||| |||||||| |||||||| ||||||||| ||||||| |||| ||||||||||||| |||||||||| |||||||||| |
|
|
| T |
4493235 |
gtgccggagtgccaatgttgtgttggcctttctttagtgatcagccaacaaactgtagattgatttgcaatgaattggagattggagtagaaatcgata |
4493137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 4568434 - 4568215
Alignment:
| Q |
4 |
aatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgt |
103 |
Q |
| |
|
||||||||| |||||||| |||||| |||| |||||||||| |||||| || |||||||||||||||| ||||||||||| || |||||||| ||| |
|
|
| T |
4568434 |
aatagcaagctggtgtccgcaagagcaagtgttgaaccacccttcagttggacgattcttgactcattgtggatggaactccacattggaaagcatttgt |
4568335 |
T |
|
| Q |
104 |
gctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatacta |
203 |
Q |
| |
|
|| |||| ||||||||||||||||| | || |||||| || |||||||||||||||| ||| | | |||||| |||| ||||| ||||| | |
|
|
| T |
4568334 |
gccagagtaccaatgttatgttggccttttttttctgagcagccaacatactgcagatatatttgtaataagttggagatcggaatcgaaattgatacaa |
4568235 |
T |
|
| Q |
204 |
atgtaaagagggaggaggtg |
223 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
4568234 |
atgtgaagagagaggaggtg |
4568215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 4299587 - 4299673
Alignment:
| Q |
16 |
gtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatg |
102 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |||| | ||||||||||||||||| || |||||||||||||||| |||||||||||| |
|
|
| T |
4299587 |
gtgtccacaagaacaagtactgaaccacccttcaattggtggattcttgactcactgtggatggaactcaaccattgaaagcatatg |
4299673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 4391885 - 4391996
Alignment:
| Q |
8 |
gcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctg |
107 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||| || | | |||||||||| || ||||| ||||| |||||| ||| ||||||||| ||| || |
|
|
| T |
4391885 |
gcaagatggtgtccgaaagagcaagtattgaaccacccttgaatttgtggattcttaacgcattgtggatgaaactcacccattgaaagcatttgttcta |
4391984 |
T |
|
| Q |
108 |
gagttccaatgt |
119 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4391985 |
gagttccaatgt |
4391996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 1281494 - 1281273
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1281494 |
ctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
1281395 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
|||||||||| |||||||| ||||||||| | ||||||||| || |||| |||| |||||| ||||||||| ||||||| | |||||||||||| |
|
|
| T |
1281394 |
gtgctggagtgccaatgttgtgttggccattttttgctgatcagccaacagactgtagatttatttgtaatgaatggaagattggtatggaaatcgatac |
1281295 |
T |
|
| Q |
202 |
taatgtaaagagggaggaggtg |
223 |
Q |
| |
|
||||| ||||| ||||||||| |
|
|
| T |
1281294 |
aaatgtgaagagagaggaggtg |
1281273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 24103380 - 24103168
Alignment:
| Q |
1 |
actaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcata |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24103380 |
actaatagcaagttggtgtccacaagataaagtgttaaaccacccttcgattggtggattcttgactcattgcggatggaactcaaccactgaaagcata |
24103281 |
T |
|
| Q |
101 |
tgtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgata |
200 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||| ||| ||||||| |||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
24103280 |
tgtgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactgtagatttatttgctatgaatgggagattggactcgaaatcgata |
24103181 |
T |
|
| Q |
201 |
ctaatgtaaagag |
213 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
24103180 |
caaatgtgaagag |
24103168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 200
Target Start/End: Original strand, 27999851 - 28000049
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| |||||||||| |||| || | || ||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
27999851 |
ctaatatcaaattggtgtccacaagagaaagttttgaaccacccttcaatcagcgggttcttgactcactgcggatggaactcaaccaccgaaagcatat |
27999950 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgata |
200 |
Q |
| |
|
| |||||||| |||||||| |||||| || | ||||||||| ||||||| |||| |||||| ||||||||| ||||||| | |||||| |||| |
|
|
| T |
27999951 |
gcgctggagtgccaatgttgtgttggtcattttttgctgatcagccaacaaactgtagatttatttgtaatgaatggaagattggtatggaaattgata |
28000049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 1674606 - 1674390
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| |||||||||| |||| |||| ||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
1674606 |
ctaatatcaaattggtgtccacaagagaaagtgttgaaccacccttcaatcggcggattcttgacacactgcggatggaactcaaccactgaaagcatat |
1674507 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
| |||||||| |||||||| ||||||||| | ||||||||| ||||||| |||| |||||| ||||||||| ||||||| | |||||| ||||| |
|
|
| T |
1674506 |
gcgctggagtgccaatgttgtgttggccattttttgctgatcagccaacaaactgtagatttatttgtaatgaatggaagattggtatggaaattgatac |
1674407 |
T |
|
| Q |
202 |
taatgtaaagagggagg |
218 |
Q |
| |
|
||||| ||||| |||| |
|
|
| T |
1674406 |
gaatgtgaagagagagg |
1674390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 16686031 - 16686240
Alignment:
| Q |
14 |
tggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttc |
113 |
Q |
| |
|
||||| || |||||| ||||||| ||||| | |||| ||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
16686031 |
tggtgcccgcaagagcaagtattaaaccatccttcaatcggtggattcttaactcattgtggatggaactcaaccactgaaagtatatatgctggagttc |
16686130 |
T |
|
| Q |
114 |
caatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgtaaagag |
213 |
Q |
| |
|
||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| | |||||| || || ||||| ||||| |
|
|
| T |
16686131 |
caatgttgtgttggccattttttgctgatcagccagcaaaatgcagatatatttgcaatgaatgggagattggcatggaaattgacaccaatgtgaagag |
16686230 |
T |
|
| Q |
214 |
ggaggaggtg |
223 |
Q |
| |
|
|| |||||| |
|
|
| T |
16686231 |
agatgaggtg |
16686240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 20863595 - 20863816
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
||||| || |||||||||||||||||||| || |||||||| | |||| | |||||||| | |||||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
20863595 |
ctaatcgcgagttggtgtccacaagagaaggtgttgaaccatccttcaattggtggatttctaactcattgtggatggaactcaaccattgagagcatat |
20863694 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
|||||||||| |||||||| || |||||| | |||||||| ||||||||||||| |||||||| ||||||||||||| | ||||| || || |
|
|
| T |
20863695 |
gtgctggagtgccaatgttgtgctggccattttttgctgatcagccgacaaactgcagatacatttgcaacaaatgggagattgggatcgaaattgacac |
20863794 |
T |
|
| Q |
202 |
taatgtaaagagggaggaggtg |
223 |
Q |
| |
|
||||| ||||| ||||||||| |
|
|
| T |
20863795 |
caatgtcaagagagaggaggtg |
20863816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 3478 - 3669
Alignment:
| Q |
9 |
caagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctgg |
108 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||| ||||| |||| | |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
3478 |
caagctggtgtccacaagagcaagtactgatccacccttcaattggtggattcttgactcattgtggatggaattcaaccactgaaagcatatgcgctgg |
3577 |
T |
|
| Q |
109 |
agttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgata |
200 |
Q |
| |
|
||| |||||| | ||||||||| ||||||||| ||||||| |||| ||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
3578 |
agtaccaatgctttgttggccattctttggtgatcagccaacaaactgtagatttatttgcaacgaatgggagattggacttgaaatcgata |
3669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 3086800 - 3086580
Alignment:
| Q |
2 |
ctaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatat |
101 |
Q |
| |
|
||||| ||||| |||||||| |||||| |||||||||| |||| |||| | |||||||||||||||||||| |||||||||||||| ||||||| || |
|
|
| T |
3086800 |
ctaatcgcaagctggtgtccgcaagagcaagtattgaatcacccttcaattggtggattcttgactcattgtggatggaactcaacggttgaaagcgtac |
3086701 |
T |
|
| Q |
102 |
gtgctggagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatac |
201 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||||| ||| |||||| |||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
3086700 |
ttgctggagtgccaatgttgtgttggccattttatggagatcaaccaataaactgtagatatatctgcaatatatgggagattggaattgaaatcgatac |
3086601 |
T |
|
| Q |
202 |
taatgtaaagagggaggaggt |
222 |
Q |
| |
|
|||||| ||||| |||||||| |
|
|
| T |
3086600 |
taatgtgaagagagaggaggt |
3086580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 4450 - 4566
Alignment:
| Q |
14 |
tggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttc |
113 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| |||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | |
|
|
| T |
4450 |
tggtgtccacaagagcaagtactgaaccacccttcaattggtggattcttgactcattgcggatggaactcaaccattgaaagcatatgtgtaggagtgc |
4549 |
T |
|
| Q |
114 |
caatgttatgttggcca |
130 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
4550 |
caatgttgtgttggcca |
4566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 3443 - 3657
Alignment:
| Q |
8 |
gcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctg |
107 |
Q |
| |
|
||||| |||||||| ||||| |||| |||||||||| || ||| ||||||||||| |||||||| |||||||||||||||| ||||||||| ||| ||| |
|
|
| T |
3443 |
gcaagatggtgtccgtaagagcaagtgttgaaccaccctt-agttggtggattcttaactcattgtggatggaactcaaccattgaaagcatttgttctg |
3541 |
T |
|
| Q |
108 |
gagttccaatgttatgttggccannnnnnncggatcagccagcaaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgt |
207 |
Q |
| |
|
||||||||||| | |||||||| | || || || ||||||| |||| ||||| ||||||||||||||||||| ||||| ||| | ||||| |
|
|
| T |
3542 |
gagttccaatgctgcgttggccatttttccccgaacactcaacaaactgtagatgcatttggaatgaatgggagattggaagtgaaatagattccaatgt |
3641 |
T |
|
| Q |
208 |
aaagagggaggaggtg |
223 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
3642 |
gaagagagaggaggtg |
3657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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