View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2325_high_2 (Length: 497)
Name: NF2325_high_2
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 7e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 338 - 490
Target Start/End: Complemental strand, 27506908 - 27506756
Alignment:
| Q |
338 |
attgtgtttgtgctaaaatgagaaatgaagaatcatagtgaaatgggattgggaggggaagaggggaaccatgaaaataaaaacttcatatcggacgaat |
437 |
Q |
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| T |
27506908 |
attgtgtttgtgctaaaatgagaaatgaagaatcatagtgaaatgggattgggaggggaagaggggaaccatgaaaataaaaacttcatatcggacgaat |
27506809 |
T |
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| Q |
438 |
taataaataaatctgtctacatttatgggagctacctacgtgcccttcttctc |
490 |
Q |
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| T |
27506808 |
taataaataaatctgtctacatttatgggagctacctacgtgcccttcttctc |
27506756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 27507112 - 27507005
Alignment:
| Q |
134 |
ttttatttaattcttagtatgaaataagcaataaattaaagaggcggtaaaagttaggagaaaaatagaaatacaagtaaagttaagtgcacgactacca |
233 |
Q |
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| T |
27507112 |
ttttatttaattcttagaatgaaataagcaataaattaaagaggcggtaaaagttaggagaaaaatagaaatacaagtaaagttaagtgcacgactacca |
27507013 |
T |
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| Q |
234 |
tatatagc |
241 |
Q |
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|||||||| |
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| T |
27507012 |
tatatagc |
27507005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 27507288 - 27507168
Alignment:
| Q |
18 |
gtgtttgcctttaaattacttgccattacataattaacacctgtacgtatgatgttgttcagaca-ttttactttaaatttacttacttttaccggctat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
27507288 |
gtgtttgcctttaaattacttgccattacataattaacacctgtacatatgatgttgttcagatatttttactttaaatttacttacttttaccggctat |
27507189 |
T |
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| Q |
117 |
aacccatttctcaactctttt |
137 |
Q |
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| T |
27507188 |
aacccatttctccactctttt |
27507168 |
T |
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