View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2325_high_3 (Length: 485)
Name: NF2325_high_3
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_high_3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 35820869 - 35820398
Alignment:
| Q |
17 |
aacaaattgatagaattaataagtgatatatttnnnnnnnnnntgtatctacaaatttctagatgaccttatatttagagacataacnnnnnnna--aaa |
114 |
Q |
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| T |
35820869 |
aacaaattgatagaattaataagtgatatattttaaaaaaaaatgtatctacaaatttctagatgaccttatatttagagacataacttttttttttaaa |
35820770 |
T |
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| Q |
115 |
atggtcttagaagtaaggacaaattgg-aacgataaactgaaaaattagtgagatagtacattagtagtatggtccatttattacaatgagtctcattaa |
213 |
Q |
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| T |
35820769 |
atggtcttagaagcaaggacaaattgggaacgataaactgaaaaattagtgagatagtacattagtcgtatggtccatttattacaatgagtctcattaa |
35820670 |
T |
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| Q |
214 |
tttatcattatggagggataaacaaatagaattagactctcatttcatctcgttaaacgcggccacggcactataaataagaattactagcctcactttt |
313 |
Q |
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| T |
35820669 |
tttatcattatggagggataaacaaatagaattagactctcatttcatctcgttaaacgcggccacggcactataaataagaattactagcctcactttt |
35820570 |
T |
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| Q |
314 |
tgtacatcactcaatatctcattttcaatttcaattcagtcattattaaaactataattagaatctccttatcaataatttgataatgatgagatcaagt |
413 |
Q |
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| T |
35820569 |
tgtacatcactcaatatctcattttcaatttcaattcagtcattattaaaactagaattagaatctccttatcaataatttgataatgatgagatcaagt |
35820470 |
T |
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| Q |
414 |
tttcttttgattctatcaatgctaattatcagtactccattgtcatctgcacataagtttaaggtcggtggg |
485 |
Q |
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| T |
35820469 |
tttcttttgattctatcaatgctaattatcagtactccattgttatctgcacataagtttaaggtcggtggg |
35820398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 484
Target Start/End: Complemental strand, 39691783 - 39691697
Alignment:
| Q |
398 |
aatgatgagatcaagttttcttttgattctatcaatgctaattatcagtactccattgtcatctgcacataagtttaaggtcggtgg |
484 |
Q |
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| T |
39691783 |
aatgatgagatatggttttgttttgattgtatcaatgctagttctcagcacttcattgtcatctgcatacaagtttaatgtcggtgg |
39691697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 484
Target Start/End: Original strand, 39703738 - 39703824
Alignment:
| Q |
398 |
aatgatgagatcaagttttcttttgattctatcaatgctaattatcagtactccattgtcatctgcacataagtttaaggtcggtgg |
484 |
Q |
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| T |
39703738 |
aatgatgagatatggttttgttttgattgtatcaatgctagttctcagcacttcattgtcatctgcatacaagtttaatgtcggtgg |
39703824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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