View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2325_high_7 (Length: 423)
Name: NF2325_high_7
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 407
Target Start/End: Original strand, 32403379 - 32403774
Alignment:
| Q |
12 |
atcatcaatgtgaacttttggagtttggagagtgcctaatatttattgtagcttatggcatttttcatagttataaatgtaaacctattttttatggcat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
32403379 |
atcatcaatgtgaacttttggagtttggagagtgcctaatatttattatagcttatggcatttttcatagttatagatataaacctattttttatggcat |
32403478 |
T |
|
| Q |
112 |
cctttatgattgaaaaagaaagtgttttagttgaatctgaatcgtagggttcatccttctcacatatcagaagattcaaaatcaccatttttcctctttc |
211 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32403479 |
cctttatgtttgaaaaagaaagtgttttagttgaatctgaatcgtagggttcatccttctcacatatcagaagattcaaaatcaccatttttcttctttc |
32403578 |
T |
|
| Q |
212 |
aaaatcacatgtcagaagaaaaagtggtttttgacatttttcttgttattaatgtttaatattttaatactgttgggatttatgttattgtcttatcacc |
311 |
Q |
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| T |
32403579 |
aaaatcacaagtcagaagaaaaagtggtttttgacatttttcttgttattaatgtttaatattttaatattgttgggatttatgttattgtcttatcacc |
32403678 |
T |
|
| Q |
312 |
atttcaaagggctggatgagcagagtaagataaagtatatatatgcacaaatgttgtgtgtctgaatcttgctccaaacaattgttgatgtttctg |
407 |
Q |
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| T |
32403679 |
attccaaagggctggatgagcagagttagataaagtgtatatatgcacaaatgttgtgtgtctgaatcttgctccaaacaattgttgatggttctg |
32403774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 396
Target Start/End: Complemental strand, 12695975 - 12695596
Alignment:
| Q |
15 |
atcaatgtgaacttttggagtttggagagtgcctaatatttattgtagcttatggcatttttc-atagttataaatgtaaacctatttt--ttatggcat |
111 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||| | ||||||||||||||||||||| ||| || |
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| T |
12695975 |
atcaatgtgaacttc-ggagtttggagagtgcctggtatttattgtcgcttatgccatttttttagagttataaatgtaaacctattgaaatta----at |
12695881 |
T |
|
| Q |
112 |
cctttatgattgaaaaagaaagtgttttagttgaatctgaatcgtagggttcatccttctcacatatcagaagattcaaaatcaccatttttcctctttc |
211 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
12695880 |
actttatgattggaaaagaaagtgttctagttgaatctgaatcgtatggttcatcc--ctcacatatcagaagattcaaaatcgccatttttcttctttg |
12695783 |
T |
|
| Q |
212 |
aaaatcacatgtcagaagaaaaagtggtttttgacatttttcttgttattaatgtttaatattttaatactgttgggatttatgtta---ttgtcttatc |
308 |
Q |
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|| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||| | |
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| T |
12695782 |
aagatcacatgtcagaagaaagagtggtttatgacatttttcttgttattaatgtttaatattttaatactatt-ggatttatgttattcttttcttagc |
12695684 |
T |
|
| Q |
309 |
accatttcaaagggctggatgagcagagtaagataaagtatatatatgcacaaatgttgtgtgtctgaatcttgctccaaacaattgt |
396 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12695683 |
accattccagagggctggatgagcagagtaagataaagtatatatatgcacaaatgttgtgtgtctgaatcttgcaccaaacaattgt |
12695596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 48200504 - 48200121
Alignment:
| Q |
15 |
atcaatgtgaacttttggagtttggagagtgcctaatatttattgtagcttatggcatttttc-atagttataaatgtaaacctatttt--ttatggcat |
111 |
Q |
| |
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||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |||||||| ||||||||| ||||||||||||| ||| || |
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| T |
48200504 |
atcaatgtgaacttt-ggagtttggagagtgcctgatatttattgtggcttatcgcatttttttatagttatagatgtaaacctattgaaatta----at |
48200410 |
T |
|
| Q |
112 |
cctttatgattgaaaaagaaagtgttttagttgaatctgaatcgtagggttcatccttctcacatatcagaagattcaaaatcaccatttttcctctttc |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| | ||| |
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| T |
48200409 |
actttatgattgaaaaagaaagtgttttagttgaatctgaatcgttgggttcatccttc--acatgtcagaagattcaaaatcaccatttttcttaattc |
48200312 |
T |
|
| Q |
212 |
aaaatcacatgtcagaagaaaaagtggtttttgacatttttcttgttattaatgtttaatattttaatactgttgggatttatgttattgtcttatcacc |
311 |
Q |
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||||||| ||||||||||||| |||||||| || ||||||||||||||| | ||||||||||||||||||| || |||||||||| || |||||||||| |
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| T |
48200311 |
aaaatcaaatgtcagaagaaagagtggtttatggcatttttcttgttataactgtttaatattttaatactatt-ggatttatgtcat--tcttatcacc |
48200215 |
T |
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| Q |
312 |
atttcaaagggctggatgagcagagtaagataaag--tatatatatgcacaaatgttgtgtgtctgaatcttgctccaaacaattgttgatgttt |
404 |
Q |
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| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
48200214 |
a-ttcaaagggctggatgagtagagtaagataaagtatatatatatgcacaaatgttgtgtgtctgaatcttgcaccaaacaattgttgctgttt |
48200121 |
T |
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