View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2325_high_9 (Length: 379)
Name: NF2325_high_9
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 39210192 - 39210322
Alignment:
| Q |
5 |
ggcaaaagaaacaggggttaacatttcaacatatattggctcnnnnnnntgaaaacttttgaagtttgaaacatataagtatacacatttagtagctcta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39210192 |
ggcaaaagaaacaggggttaacatttcaacatatattggctcaaaaaaatgaaaacttttgaagtttgaaacatataagtatacacatttagtagctcta |
39210291 |
T |
|
| Q |
105 |
atctaacattgcatggtatttgatatgttgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39210292 |
atctaacattgcatggtatttgatatgttgt |
39210322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 364
Target Start/End: Original strand, 39210474 - 39210551
Alignment:
| Q |
287 |
tttaccttcacagaacagaacaatggaaaatggtaaagatgaagaaaatgaaagttgaggatttaggagtgaaggtgt |
364 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39210474 |
tttaccttcacttcacagaacaatggaaaatggtaaagatgaagaaaatgaaagttgagggtttaggagtgaaggtgt |
39210551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 39200055 - 39200091
Alignment:
| Q |
97 |
tagctctaatctaacattgcatggtatttgatatgtt |
133 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
39200055 |
tagctctaatctaacagtgcatggtatttgatttgtt |
39200091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 39210379 - 39210407
Alignment:
| Q |
192 |
atgttgtcttgctacggtaacggttgagt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39210379 |
atgttgtcttgctacggtaacggttgagt |
39210407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University