View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2325_low_1 (Length: 616)
Name: NF2325_low_1
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 216 - 600
Target Start/End: Complemental strand, 30240434 - 30240050
Alignment:
| Q |
216 |
tcaatggtcaaatgaagacaccgccatttattactccactgctgtgtatcctcaaatccaaataatttgcaatacattcggttgcttttatagatagctt |
315 |
Q |
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| T |
30240434 |
tcaatggtcaaatgaagacaccgccatttattactacactgctgtgtatcctcaaatccaaataatttgcaatacatttggttgattttatagatagctt |
30240335 |
T |
|
| Q |
316 |
tcttctcttgttctctcaaatcttccgatgtgggacttaaacaacatcattgtgcacttatgctactagcttcctgtcaactttgatggggcttattatt |
415 |
Q |
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| T |
30240334 |
tcttctcttgttctctcaaatcttccgatatgggacttaaacaacatcattgtgcacttatgctactagcttcctgtcaactttgatggggcttattatt |
30240235 |
T |
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| Q |
416 |
cttttttgcatgaagtggcttattttatcatatagtgttggacttgtttctttttagcattagtactgcgaacaaacgcgtactgaatctctatacccca |
515 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
30240234 |
cttttttgcatgaagtggcttatttcatcatatagtgttggacttgtttctttttagcattagtactgcgaacagacgcgtactgaagctctatacccca |
30240135 |
T |
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| Q |
516 |
tacgtaccgaattcttcacatatgtgactatggtctcaacatttgcaaatggatcaccaattgggacacctttatttgtgttaca |
600 |
Q |
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| T |
30240134 |
tacgtaccgaattcttcacatatgtgactatggtctcaacatttgcaaatggatcaccaattgggacaccttcatttgtgttaca |
30240050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 30240624 - 30240522
Alignment:
| Q |
11 |
caaaggataacacaattggttgataaaaagcttgaactttnnnnnnntgagacatagtcatattagtgatcaatatataagaaatagtcatagcacacag |
110 |
Q |
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| T |
30240624 |
caaaggataacacaattggttgataaaa-gcttgaactttaaaaaaatgagacatagtcatattggtgatcaatatataagaaatagtcatagcacatag |
30240526 |
T |
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| Q |
111 |
tcaa |
114 |
Q |
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|||| |
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| T |
30240525 |
tcaa |
30240522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 536
Target Start/End: Original strand, 45982969 - 45982998
Alignment:
| Q |
507 |
tataccccatacgtaccgaattcttcacat |
536 |
Q |
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| T |
45982969 |
tataccccatacgtaccgaattcttcacat |
45982998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 355
Target Start/End: Complemental strand, 26637750 - 26637685
Alignment:
| Q |
290 |
cattcggttgcttttatagatagctttcttctcttgttctctcaaatcttccgatgtgggacttaa |
355 |
Q |
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| T |
26637750 |
catttggttggttttataaacagctctcttctcttgttctttcaaatcatccgatgtgggacttaa |
26637685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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