View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2325_low_12 (Length: 351)

Name: NF2325_low_12
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2325_low_12
NF2325_low_12
[»] chr1 (10 HSPs)
chr1 (1-335)||(5421665-5421999)
chr1 (291-333)||(23902102-23902144)
chr1 (291-333)||(25005832-25005874)
chr1 (291-333)||(25006069-25006111)
chr1 (291-333)||(25479574-25479616)
chr1 (232-274)||(31517692-31517734)
chr1 (291-333)||(49888760-49888802)
chr1 (296-333)||(26946487-26946524)
chr1 (301-333)||(12564919-12564951)
chr1 (222-274)||(36070257-36070309)
[»] chr3 (8 HSPs)
chr3 (239-333)||(2100138-2100232)
chr3 (220-285)||(20194973-20195038)
chr3 (291-333)||(23249551-23249593)
chr3 (291-333)||(43875641-43875683)
chr3 (304-333)||(21865569-21865598)
chr3 (224-273)||(50760668-50760717)
chr3 (295-335)||(19679367-19679407)
chr3 (221-273)||(44295604-44295656)
[»] chr8 (8 HSPs)
chr8 (222-331)||(34770887-34770996)
chr8 (291-331)||(30627937-30627977)
chr8 (295-333)||(8062322-8062360)
chr8 (221-275)||(31884881-31884935)
chr8 (233-274)||(2487961-2488002)
chr8 (296-333)||(24558846-24558883)
chr8 (234-294)||(778445-778505)
chr8 (301-333)||(9834834-9834866)
[»] chr2 (7 HSPs)
chr2 (232-328)||(1318258-1318354)
chr2 (232-287)||(787395-787450)
chr2 (234-272)||(3227652-3227690)
chr2 (235-296)||(32106754-32106815)
chr2 (232-288)||(1801730-1801786)
chr2 (232-288)||(5902501-5902557)
chr2 (293-333)||(39983335-39983375)
[»] chr4 (8 HSPs)
chr4 (292-334)||(16494841-16494883)
chr4 (233-277)||(22471347-22471391)
chr4 (234-272)||(4500909-4500947)
chr4 (292-326)||(11158393-11158427)
chr4 (295-333)||(30207610-30207648)
chr4 (291-333)||(42866061-42866103)
chr4 (234-288)||(50742790-50742844)
chr4 (296-333)||(35571671-35571708)
[»] chr5 (10 HSPs)
chr5 (232-288)||(11714816-11714872)
chr5 (291-333)||(6593292-6593334)
chr5 (291-333)||(7907874-7907916)
chr5 (291-333)||(34117571-34117613)
chr5 (293-333)||(2568651-2568691)
chr5 (231-279)||(11104976-11105024)
chr5 (232-288)||(25720369-25720425)
chr5 (301-333)||(34205232-34205264)
chr5 (293-333)||(34245717-34245757)
chr5 (259-331)||(42646910-42646982)
[»] chr7 (6 HSPs)
chr7 (221-295)||(8094361-8094435)
chr7 (291-333)||(28340879-28340921)
chr7 (233-275)||(33894702-33894744)
chr7 (221-298)||(20269377-20269453)
chr7 (234-319)||(36532359-36532444)
chr7 (291-331)||(32210262-32210302)
[»] chr6 (5 HSPs)
chr6 (295-333)||(2727895-2727933)
chr6 (291-333)||(31812048-31812090)
chr6 (234-272)||(32997594-32997632)
chr6 (292-329)||(33067155-33067192)
chr6 (234-287)||(34538172-34538225)


Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 5421665 - 5421999
Alignment:
Q  1 aagcatatgtgaagaaatttatctaagtcagctgctatcgcaatttgagttgcaacatcaatgtttgtattgttaccgcaactatgcagctgtgatttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5421665 aagcatatgtgaagaaatttatctaagtcagctgctatcgcaatttgagttgcaacatcaatgtttgtattgttaccgcaactatgcagctgtgatttag 5421764  T
Q  101 gtcatattttactgctttctaccccaaaattatacattgcaaagcaaccactatttaaaatcttggtcataacagtatcgaatcatatactgaattgtac 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5421765 gccatattttactgctttctaccccaaaattatacattgcaaagcaaccactatttaaaatcttggtcataacagtatcgaatcatatactgaattgtac 5421864  T
Q  201 atcgaaaagactttaaactacttatcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtttgtaagctctct 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5421865 atcgaaaagattttaaactacttatcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtttgtaagctctct 5421964  T
Q  301 aagatagcttatcaaaacaacttatagcttataag 335  Q
    |||||||||||||||||||||||||||||||||||    
T  5421965 aagatagcttatcaaaacaacttatagcttataag 5421999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 23902102 - 23902144
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  23902102 taagctctctaagatagcttttgaaaacaacttatagcttata 23902144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 25005832 - 25005874
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||| | |||||||||| ||||||||||||||||||||    
T  25005832 taagctctccaggatagcttatgaaaacaacttatagcttata 25005874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 25006069 - 25006111
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    |||| |||| |||||||||||| ||||||||||||||||||||    
T  25006069 taagatctccaagatagcttatgaaaacaacttatagcttata 25006111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 25479616 - 25479574
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||    
T  25479616 taagctctctaggatagcttatgaaaacaacttatagcctata 25479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 31517692 - 31517734
Alignment:
Q  232 gcataagcacttgtgagaccgtttgtgagaacttataaaaaca 274  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||    
T  31517692 gcataagcacttgtgagactgtttgggagaacttatcaaaaca 31517734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 49888802 - 49888760
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    |||| ||||||||||||||||| ||||||||| ||||||||||    
T  49888802 taagttctctaagatagcttatgaaaacaactaatagcttata 49888760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 26946487 - 26946524
Alignment:
Q  296 tctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  26946487 tctctaagatagcttatgaaaacgacttatagcttata 26946524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Original strand, 12564919 - 12564951
Alignment:
Q  301 aagatagcttatcaaaacaacttatagcttata 333  Q
    |||||||||||| ||||||||||||||||||||    
T  12564919 aagatagcttatgaaaacaacttatagcttata 12564951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 36070309 - 36070257
Alignment:
Q  222 ttatcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaaca 274  Q
    ||||||||  ||||||||||||||||||| ||||  |||||||||| ||||||    
T  36070309 ttatcttctggcataagcacttgtgagactgtttaggagaacttatgaaaaca 36070257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 2100138 - 2100232
Alignment:
Q  239 cacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtttgtaagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    |||||||||||| |||||||||| |||||  | |||| ||| ||||||||  ||||||||| |||||| ||||| ||||||||||||||||||||    
T  2100138 cacttgtgagactgtttgtgagagcttatggagacagcttatgacatgttcctaagctctccaagataacttatgaaaacaacttatagcttata 2100232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 20194973 - 20195038
Alignment:
Q  220 acttatcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacat 285  Q
    ||||||||||  ||||||||| ||||||||| |||||||||| ||||| ||||||||||| |||||    
T  20194973 acttatcttcttgcataagcagttgtgagactgtttgtgagagcttatgaaaacagtttatgacat 20195038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 23249593 - 23249551
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||    
T  23249593 taagctttctaagatagcttatgaaaacaacttatatcttata 23249551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 43875683 - 43875641
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||| | |||||||||| ||||||||||||||||||||    
T  43875683 taagctctccatgatagcttatgaaaacaacttatagcttata 43875641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 333
Target Start/End: Complemental strand, 21865598 - 21865569
Alignment:
Q  304 atagcttatcaaaacaacttatagcttata 333  Q
    ||||||||||||||||||||||||||||||    
T  21865598 atagcttatcaaaacaacttatagcttata 21865569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 50760717 - 50760668
Alignment:
Q  224 atcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaac 273  Q
    |||| ||||||||||||||||||| |||| ||| |||||||||| |||||    
T  50760717 atctacaagcataagcacttgtgacaccgcttgagagaacttatgaaaac 50760668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 19679367 - 19679407
Alignment:
Q  295 ctctctaagatagcttatcaaaacaacttatagcttataag 335  Q
    ||||| ||||||| |||| ||||||||||||||||||||||    
T  19679367 ctctccaagatagtttataaaaacaacttatagcttataag 19679407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 44295656 - 44295604
Alignment:
Q  221 cttatcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaac 273  Q
    ||||||| ||||||||||||||||||| ||  |||| |||||||||| |||||    
T  44295656 cttatctacaagcataagcacttgtgatactatttgagagaacttatgaaaac 44295604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 222 - 331
Target Start/End: Complemental strand, 34770996 - 34770887
Alignment:
Q  222 ttatcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtttgtaagctctctaagatagcttatcaaaacaac 321  Q
    |||||| | ||||||||||||||||| || ||||| |||| | ||| ||||||| ||| |||||||   | | ||||||| |||||||||| ||||||||    
T  34770996 ttatctgctagcataagcacttgtgaaactgtttgagagatcctatgaaaacagcttatgacatgtccatgaactctctaggatagcttatgaaaacaac 34770897  T
Q  322 ttatagctta 331  Q
    ||||||||||    
T  34770896 ttatagctta 34770887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 30627937 - 30627977
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagctta 331  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  30627937 taagctctctaagataacttatgaaaacaacttatagctta 30627977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 8062360 - 8062322
Alignment:
Q  295 ctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  8062360 ctctctaagatagcttatgaaaacagcttatagcttata 8062322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 31884881 - 31884935
Alignment:
Q  221 cttatcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaacag 275  Q
    ||||||| | |||||||||||||||||||  ||||| || |||||||||||||||    
T  31884881 cttatctactagcataagcacttgtgagagtgtttgggaaaacttataaaaacag 31884935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 2487961 - 2488002
Alignment:
Q  233 cataagcacttgtgagaccgtttgtgagaacttataaaaaca 274  Q
    |||||||||||||||||| ||||| |||||||||| ||||||    
T  2487961 cataagcacttgtgagactgtttgggagaacttatgaaaaca 2488002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 24558883 - 24558846
Alignment:
Q  296 tctctaagatagcttatcaaaacaacttatagcttata 333  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  24558883 tctccaagatagcttatgaaaacaacttatagcttata 24558846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 778505 - 778445
Alignment:
Q  234 ataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtttgtaag 294  Q
    ||||||||||||||||| |||||  ||||||||| ||||||   ||||||| |||||||||    
T  778505 ataagcacttgtgagactgtttgcaagaacttatgaaaacaacataagacacgtttgtaag 778445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Original strand, 9834834 - 9834866
Alignment:
Q  301 aagatagcttatcaaaacaacttatagcttata 333  Q
    |||||||||||| ||||||||||||||||||||    
T  9834834 aagatagcttatgaaaacaacttatagcttata 9834866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 328
Target Start/End: Complemental strand, 1318354 - 1318258
Alignment:
Q  232 gcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtttgtaagctctctaagatagcttatcaaaacaacttatagc 328  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||  ||| |||||||    |||||||||| ||| |||| | |||| ||||||||||    
T  1318354 gcataagcacttgtgagactgtttgtgagagcttatgaaaacatcttatgacatgtccagaagctctctaggatggcttgtgaaaataacttatagc 1318258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 787450 - 787395
Alignment:
Q  232 gcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgt 287  Q
    |||||||||||||||| || |||||||||||||||| ||||||| ||| |||||||    
T  787450 gcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgt 787395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 3227652 - 3227690
Alignment:
Q  234 ataagcacttgtgagaccgtttgtgagaacttataaaaa 272  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  3227652 ataaacacttgtgagactgtttgtgagaacttataaaaa 3227690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 32106754 - 32106815
Alignment:
Q  235 taagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtttgtaagct 296  Q
    ||||| ||| |||||| |||||||||||||||| ||||||| ||| ||||| | ||||||||    
T  32106754 taagctcttatgagactgtttgtgagaacttatgaaaacagcttatgacatatctgtaagct 32106815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 1801786 - 1801730
Alignment:
Q  232 gcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtt 288  Q
    |||||||||||||||| |  ||||| |||||||||| ||||||| ||| ||||||||    
T  1801786 gcataagcacttgtgatattgtttgggagaacttatgaaaacagcttatgacatgtt 1801730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 5902501 - 5902557
Alignment:
Q  232 gcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtt 288  Q
    |||||| |||||||||||| |||||  ||||||||| ||||||| ||| ||||||||    
T  5902501 gcataaacacttgtgagactgtttggaagaacttatgaaaacagcttatgacatgtt 5902557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 39983375 - 39983335
Alignment:
Q  293 agctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||| | |||||||||| ||||||||||||||||||||    
T  39983375 agctctccaggatagcttatgaaaacaacttatagcttata 39983335  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 16494841 - 16494883
Alignment:
Q  292 aagctctctaagatagcttatcaaaacaacttatagcttataa 334  Q
    |||||||| |||||||||||| |||||||||||||||||||||    
T  16494841 aagctctccaagatagcttatgaaaacaacttatagcttataa 16494883  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 22471391 - 22471347
Alignment:
Q  233 cataagcacttgtgagaccgtttgtgagaacttataaaaacagtt 277  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||    
T  22471391 cataagcacttgtgagactgtttgggagaacttatgaaaacagtt 22471347  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 4500947 - 4500909
Alignment:
Q  234 ataagcacttgtgagaccgtttgtgagaacttataaaaa 272  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  4500947 ataaacacttgtgagactgtttgtgagaacttataaaaa 4500909  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 326
Target Start/End: Original strand, 11158393 - 11158427
Alignment:
Q  292 aagctctctaagatagcttatcaaaacaacttata 326  Q
    ||||||||||||||||||||| |||||||||||||    
T  11158393 aagctctctaagatagcttatgaaaacaacttata 11158427  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 30207610 - 30207648
Alignment:
Q  295 ctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  30207610 ctctctaaggtagcttatgaaaacaacttatagcttata 30207648  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 42866103 - 42866061
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||| | |||||||||| ||||||||||||||||||||    
T  42866103 taagctctcaaggatagcttatgaaaacaacttatagcttata 42866061  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 50742790 - 50742844
Alignment:
Q  234 ataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtt 288  Q
    |||||||||||| |||| ||||| |||||||||| ||||||||| | ||||||||    
T  50742790 ataagcacttgttagactgtttgagagaacttatgaaaacagttcatgacatgtt 50742844  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 35571671 - 35571708
Alignment:
Q  296 tctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  35571671 tctctaagatagcttatgaaaacagcttatagcttata 35571708  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 11714816 - 11714872
Alignment:
Q  232 gcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtt 288  Q
    |||||| |||||||||||  ||||| |||||||||||||||||| ||| ||||||||    
T  11714816 gcataaacacttgtgagatagtttgggagaacttataaaaacagattaggacatgtt 11714872  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 6593334 - 6593292
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||    
T  6593334 taagctctctaaggtagcttatcaaaacagcttatagcctata 6593292  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Complemental strand, 7907916 - 7907874
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||    
T  7907916 taagctctccaagacagcttatcaaaacaacttataacttata 7907874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 34117571 - 34117613
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||| |||||||||||| ||| ||||||||||||||||    
T  34117571 taagctctccaagatagcttatgaaagcaacttatagcttata 34117613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 2568691 - 2568651
Alignment:
Q  293 agctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||| | |||||||||| ||||||||||||||||||||    
T  2568691 agctctccatgatagcttatgaaaacaacttatagcttata 2568651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 11105024 - 11104976
Alignment:
Q  231 agcataagcacttgtgagaccgtttgtgagaacttataaaaacagttta 279  Q
    ||||||||||||||||| ||  |||| |||||||||| |||||||||||    
T  11105024 agcataagcacttgtgatactatttgggagaacttatgaaaacagttta 11104976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 25720369 - 25720425
Alignment:
Q  232 gcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtt 288  Q
    ||||||||||||||||||| || || |||| |||||||||||| || | ||||||||    
T  25720369 gcataagcacttgtgagactgtctgagagagcttataaaaacaattcatgacatgtt 25720425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 34205264 - 34205232
Alignment:
Q  301 aagatagcttatcaaaacaacttatagcttata 333  Q
    |||||||||||| ||||||||||||||||||||    
T  34205264 aagatagcttatgaaaacaacttatagcttata 34205232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 34245757 - 34245717
Alignment:
Q  293 agctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||| | |||||||||| ||||||||||||||||||||    
T  34245757 agctctccatgatagcttataaaaacaacttatagcttata 34245717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 42646982 - 42646910
Alignment:
Q  259 agaacttataaaaacagtttaagacatgtttgtaagctctctaagatagcttatcaaaacaacttatagctta 331  Q
    ||||||||| |||| || ||| ||||||||  ||||||||| ||||| | |||| |||||| |||||||||||    
T  42646982 agaacttatgaaaatagcttatgacatgttcataagctctccaagatcgtttatgaaaacaccttatagctta 42646910  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 8094435 - 8094361
Alignment:
Q  221 cttatcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtttgtaagc 295  Q
    ||||||| | ||||||||||||||||||||  |||| ||||  |||| ||||||| ||| ||||||||| |||||    
T  8094435 cttatctactagcataagcacttgtgagactatttgagagattttatgaaaacagcttatgacatgtttataagc 8094361  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 28340879 - 28340921
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||||| |||||||||| |||||| |||||||||||||    
T  28340879 taagctctctaggatagcttatgaaaacagcttatagcttata 28340921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 33894744 - 33894702
Alignment:
Q  233 cataagcacttgtgagaccgtttgtgagaacttataaaaacag 275  Q
    |||||||||||||||||| |||||||||| ||||| |||||||    
T  33894744 cataagcacttgtgagactgtttgtgagagcttatgaaaacag 33894702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 20269453 - 20269377
Alignment:
Q  221 cttatcttcaagcataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtttgtaagctct 298  Q
    ||||||| |||||||||||||||||||||| |||    |||||||||||||| |||| |  | |||||||||||||||    
T  20269453 cttatctacaagcataagcacttgtgagactgttcagaagaacttataaaaa-agttcatcaaatgtttgtaagctct 20269377  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 36532444 - 36532359
Alignment:
Q  234 ataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgtttgtaagctctctaagatagcttatcaaaaca 319  Q
    |||||||| |||||||| ||||| ||||||||||| || ||  |||  |||||||  |||||||||||||||  ||||| ||||||    
T  36532444 ataagcacctgtgagactgtttgagagaacttatagaaccaacttataacatgttcataagctctctaagatgacttataaaaaca 36532359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 32210302 - 32210262
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagctta 331  Q
    ||||||||| |||||||||||| ||||||||||||| ||||    
T  32210302 taagctctcaaagatagcttataaaaacaacttataactta 32210262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 2727895 - 2727933
Alignment:
Q  295 ctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  2727895 ctctctaggatagcttatgaaaacaacttatagcttata 2727933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 31812048 - 31812090
Alignment:
Q  291 taagctctctaagatagcttatcaaaacaacttatagcttata 333  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||    
T  31812048 taagctctccaagatagcttatgaaaacaacttatatcttata 31812090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 32997632 - 32997594
Alignment:
Q  234 ataagcacttgtgagaccgtttgtgagaacttataaaaa 272  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  32997632 ataagcacttgtgagaccgtttgagagagcttataaaaa 32997594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 33067192 - 33067155
Alignment:
Q  292 aagctctctaagatagcttatcaaaacaacttatagct 329  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  33067192 aagctctccaagatagcttatgaaaacaacttatagct 33067155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 34538172 - 34538225
Alignment:
Q  234 ataagcacttgtgagaccgtttgtgagaacttataaaaacagtttaagacatgt 287  Q
    |||||||||||||||||  |||| |||| ||||||||||||| ||| |||||||    
T  34538172 ataagcacttgtgagactatttgagagatcttataaaaacagcttacgacatgt 34538225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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