View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2325_low_13 (Length: 334)
Name: NF2325_low_13
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 316
Target Start/End: Original strand, 24634237 - 24634545
Alignment:
| Q |
8 |
gagcagagatggcatgacttgaacattcaaaccagtgttaagtgaggtttctctagtcggtcaagtaaaatattaatagtcaaatggtaccgtctctcca |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24634237 |
gagctgagatggcatgacttgaacattcaaaccagtgttaagtgaggtttctctagtcggtcaagtaaaatattaatagtcaaatggtatcgtctctcca |
24634336 |
T |
|
| Q |
108 |
tgccagtccggttctgatatgaaaatgaaggttaaacatgtgtatctaaagattattgtgttttattgctggaaacaagtcttacaaaagcctagttctg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24634337 |
tgccagtccggttctgatatgaaaatgaaggttaaacatgtgtatctaaagattattgtgttttattgctggaaacaagtcttacaagagcctagttctg |
24634436 |
T |
|
| Q |
208 |
atttcttgtaaatgaaatgtctcatttattgataacgtgatgaattgatcataatgaactcaatggaccttatttatacatcagtctatatgaaagtgaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24634437 |
atttcttgtaaatgaaatgtctcatttattgataacttgatgaattgatcataatgaactcaatggaccttatttatacatcagtctatatgaaagtgaa |
24634536 |
T |
|
| Q |
308 |
gaagataac |
316 |
Q |
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||||||||| |
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| T |
24634537 |
gaagataac |
24634545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 32876858 - 32876770
Alignment:
| Q |
8 |
gagcagagatggcatgacttgaacattcaaaccagtgttaagtgaggtttctctagtcggtcaagtaaaatattaatagtcaaatggta |
96 |
Q |
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|||| ||| |||| ||||||||||| ||||||||||||| |||||| | | |||||||||||||||| ||||| ||||| |||||| |
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| T |
32876858 |
gagctgagctggcctgacttgaacaatcaaaccagtgttgagtgagatcttgctagtcggtcaagtaaggtattacaagtcacatggta |
32876770 |
T |
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