View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2325_low_14 (Length: 330)
Name: NF2325_low_14
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 5113423 - 5113722
Alignment:
| Q |
14 |
cagagacagtttagcaaacaca--aagaaaggaatctaggctgatgaatttgagaagctgtacaagaaggttaatgatgccattcatgtagatccttcta |
111 |
Q |
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| T |
5113423 |
cagagacaatttagcaaacgcataaagaaaggaatcgaggctgatgaatttgagaagctgtataagaaggttaatgatgccattcgtgtagatccttcta |
5113522 |
T |
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| Q |
112 |
taaagaaatcagagaagcatcctcctaaacaacacaagatgtataatctgaagaagcttacctatgaggagcggaaagctaagttgattgaatgttgcaa |
211 |
Q |
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| T |
5113523 |
taaagaaatcacagaagcatcctcctaaacaacacaagatgtataatctgaagaagcttacctatgaggagcggaaagctaagttgattgaatgttgcaa |
5113622 |
T |
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| Q |
212 |
gctcttaacactgctgttgatgacgatgaggatgacgacgagctagaacagtcttgtttgtgtctaggctacttttgaagaagtttgtcatccaatggac |
311 |
Q |
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| T |
5113623 |
gctcttaacactgctgttgatgacgatgaggatgacgacgagctagaagagtcttgtttgtgtctaggctacttttgaagaagtttgtcatccaatggac |
5113722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 10463713 - 10463668
Alignment:
| Q |
152 |
gtataatctgaagaagcttacctatgaggagcggaaagctaagttg |
197 |
Q |
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| T |
10463713 |
gtataatctgaagaagcttacctatgaggagcggaaagctaagttg |
10463668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 10463929 - 10463810
Alignment:
| Q |
36 |
aagaaaggaatctaggctgatgaatttgagaagctgtacaagaaggttaatgatgccattcatgtagatccttctataaagaaatcagagaagcatcctc |
135 |
Q |
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|||||||||||| |||| |||| ||||| |||| |||||||||||| ||| ||| |||| || ||||||| | || |||||||| |||||||| |||| |
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| T |
10463929 |
aagaaaggaatcgaggcagatggccttgaggagctttacaagaaggttcatgctgcaattcgtgcagatcctacaatcaagaaatccgagaagcagcctc |
10463830 |
T |
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| Q |
136 |
ctaaacaacacaagatgtat |
155 |
Q |
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| T |
10463829 |
caaaacaacacaagaggtat |
10463810 |
T |
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