View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2325_low_15 (Length: 326)
Name: NF2325_low_15
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 42557292 - 42556983
Alignment:
| Q |
1 |
agtctttgggaactagccaagagaacttatggagcatttgccaactctaagaacaatgacaagcactttacggacatggctgacatgaactttcttatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42557292 |
agtctttgggaactagccaagagaacttatggagcatttgccaactctaagaacaatgacaagcactttacggacatggctgacatgaactttcttatgt |
42557193 |
T |
|
| Q |
101 |
ccaaggccatagagaaccctggtttgacatcatccttaagaacatccataatgtcggtgtttgaggacacggtggttgacgacgacggcatgatgcaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42557192 |
ccaaggccatagagaaccctggtttgacatcatccttaagaacatccataatgtcggtgtttgaggacacggtggttgacgacgacggcatgatgcaaca |
42557093 |
T |
|
| Q |
201 |
agaggttggagtagaggactacattgggtgtgcttcggttcatggtttgggaccatctatgggtatttttgacaccataagggatggaaggctagattgt |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42557092 |
agaggttggagtagaggactacatggggtgtgcttcggttcatggtttgggaccatctatgggtatttttgacaccataagggatggaaggctagattgt |
42556993 |
T |
|
| Q |
301 |
gtgtgcgtgt |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
42556992 |
gtgtgcgtgt |
42556983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 25996631 - 25996720
Alignment:
| Q |
201 |
agaggttggagtagaggactacattgggtgtgcttcggttcatggtttgggaccatctatgggtatttttgacaccataagggatggaag |
290 |
Q |
| |
|
||||||||| ||||||||||| || || |||||||| |||||||| |||| |||||||| | |||||||| |||||||| |||||||| |
|
|
| T |
25996631 |
agaggttggtgtagaggactatatgggatgtgcttctgttcatggggtgggtccatctattgccatttttgataccataagagatggaag |
25996720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 26005973 - 26006031
Alignment:
| Q |
76 |
atggctgacatgaactttcttatgtccaaggccatagagaaccctggtttgacatcatc |
134 |
Q |
| |
|
||||||||| ||||||| || |||| ||||||||| || ||||||||||||||| |||| |
|
|
| T |
26005973 |
atggctgacctgaacttcctcatgtgcaaggccattgataaccctggtttgacaccatc |
26006031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University