View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2325_low_16 (Length: 320)
Name: NF2325_low_16
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 45131210 - 45130916
Alignment:
| Q |
17 |
atatagaagaatcaacacgtacattttagagatggtagaaggcatatatatacgacatgtacattgatgcaacattgtaggtcaccaattaaaactgatg |
116 |
Q |
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| T |
45131210 |
atatagaagaatcaacacgtacattttagagatggtagaaggcatatatatacgacatgtacattgatgcaacattgtaggtcaccaattaaaactgatg |
45131111 |
T |
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| Q |
117 |
gactcaaagtgaagattatcagccaaaccagaagcacaaattttagcaacttcatgtctcaattttcttggaccacaaaccataactccaacatctttgt |
216 |
Q |
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| T |
45131110 |
gactcaaagtgaagattatcagccaaaccagaagcacaaattttagcaacttcatgtctcaattttcttggaccacaaaccataactccaacatctttgt |
45131011 |
T |
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| Q |
217 |
ctttacactcaaacagaatttctgcaaaattaacaaattttatatatcactgtcctgttcatacaatcaacatggtaaaagatattagtctctgc |
311 |
Q |
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| T |
45131010 |
ctttacactcaaacagaatttctgcaaaattaacaaattttatatatcattgtcccgttgatacaatcgacatggtaaaagatattagtctctgc |
45130916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 88 - 255
Target Start/End: Complemental strand, 45114238 - 45114071
Alignment:
| Q |
88 |
acattgtaggtcaccaattaaaactgatggactcaaagtgaagattatcagccaaaccagaagcacaaattttagcaacttcatgtctcaattttcttgg |
187 |
Q |
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| T |
45114238 |
acattgtagatcaccaattaaagctgattgattcgaagtgaagattatcagccaaaccagaagcacatattctagcaacttcatgtctcatttttcttgg |
45114139 |
T |
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| Q |
188 |
accacaaaccataactccaacatctttgtctttacactcaaacagaatttctgcaaaattaacaaatt |
255 |
Q |
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| T |
45114138 |
accacaagtcataactccaacatctttgccttcacactcaaacagaatttctgcaaaattaacaaatt |
45114071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 45122604 - 45122537
Alignment:
| Q |
167 |
ttcatgtctcaattttcttggaccacaaaccataactccaacatctttgtctttacactcaaacagaa |
234 |
Q |
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| T |
45122604 |
ttcatgtctcaattatcttggacaacaaaccataacttcaacatctttgccttcacactcaaaaagaa |
45122537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 45114297 - 45114233
Alignment:
| Q |
19 |
atagaagaatcaacacgtacattttagag-atggtagaaggcatatatatacgacatgtacattg |
82 |
Q |
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| T |
45114297 |
atagaggaatcaacatgaacgttttagaggatagtaaaaggcatatatatgcgacatgtacattg |
45114233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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