View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2325_low_20 (Length: 294)
Name: NF2325_low_20
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 31 - 289
Target Start/End: Original strand, 46939484 - 46939742
Alignment:
| Q |
31 |
taattaatatataaatagagatgtgaaaattaaagcataattagcatataccttcttaatgttatgagcaatgtgtttggagctaaactcctcaagacta |
130 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46939484 |
taataaatatataaatagagatgtgaaaattaaagcataattagcatataccttcttaatgttatgagcaatgtgtttggagctaaactcctcaagacta |
46939583 |
T |
|
| Q |
131 |
tcatatgtccttcttgcacaacgaaaagcatgcacttgcatgaaacttggcatgtctgagaccaaaaccttcacttgaagtttttcaataacagaagaca |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46939584 |
tcatatgtccttcttgcacaacgaaaagcatgcacttgcatgaaacttggcatgtctgagaccaaaaccttcacttgaagtttttcaataacagaagaca |
46939683 |
T |
|
| Q |
231 |
atgtttcaatatgggacactgattttcttgcctcaacaaatttacctacctttgcttct |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46939684 |
atgtttcaatatgggacactgattttcttgcctcaacaaatttacctaccttttcttct |
46939742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University