View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2325_low_26 (Length: 239)
Name: NF2325_low_26
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_low_26 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 45141831 - 45142054
Alignment:
| Q |
16 |
catgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccga |
115 |
Q |
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| T |
45141831 |
catgattatgttacatccaaacatggtctcttaggacttgtacgttcaacgtgtggtgagcttggagcttacggaattagagtcaattcaatctcaccgt |
45141930 |
T |
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| Q |
116 |
atggtgttgccacgcctcttgcatgtagagcactgaatatggagatgagtgaagttgaagctaatatgaaagattctgctaatttgaaaggaattacact |
215 |
Q |
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| T |
45141931 |
atggtgttgccacgcctcttgcatgtagagcactgaatatggagatgagtaaagttgaagctaatatgaaagattctgctaatttgaaaggaattacact |
45142030 |
T |
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| Q |
216 |
aaaggctacgcatattgcagaagc |
239 |
Q |
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| T |
45142031 |
aaaggctacgcatattgcagaagc |
45142054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 31 - 239
Target Start/End: Original strand, 45152491 - 45152699
Alignment:
| Q |
31 |
tccaaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgc |
130 |
Q |
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| T |
45152491 |
tccaaacatggtcttataggccttgttcgctcaacgtgcagtgagcttggagcttatggaataagagttaattcaatttcaccttctggtgttgccacac |
45152590 |
T |
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| Q |
131 |
ctcttgcatgtagagcactgaatatggagatgagtgaagttgaagctaatatgaaagattctgctaatttgaaaggaattacactaaaggctacgcatat |
230 |
Q |
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| T |
45152591 |
ctcttttatgtagagcactgaacaaggatgtgagtgaagttgaagctattgggaatgattctgctaatttgaaaggaattacactaaaggctggtcatat |
45152690 |
T |
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| Q |
231 |
tgcagaagc |
239 |
Q |
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| T |
45152691 |
tgcagaagc |
45152699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 38256313 - 38256456
Alignment:
| Q |
34 |
aaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctc |
133 |
Q |
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| T |
38256313 |
aaacatggtcttataggccttgttaggtcagcatgcggtgagcttggagcttatggaatcagagtcaattcaatctcaccctatgctgttgctacacctc |
38256412 |
T |
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| Q |
134 |
ttgcatgtagagcactgaatatggagatgagtgaagttgaagct |
177 |
Q |
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| T |
38256413 |
ttgcatgtagagcactggacatggtgccgagtgaagttgaagct |
38256456 |
T |
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