View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2325_low_28 (Length: 212)
Name: NF2325_low_28
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 1732779 - 1732600
Alignment:
| Q |
14 |
cataggaagacttaagaacatcataatctctttcaagttgttttgtcttccatctagccctacggttctgaaaccatacagccacctgcctaggttgcaa |
113 |
Q |
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| T |
1732779 |
cataggaagacttaagaacatcataatctctttcaagttgttttgtcttccatctagccctacggttctgaaaccatacagccacctgcctaggttgcaa |
1732680 |
T |
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| Q |
114 |
tcctagtttcttggccaactgggttttcctctctggctcaagtttgttctcttcctcaaagctcttctccaacatatgga |
193 |
Q |
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| T |
1732679 |
tcctagtttcttggccaactgggttttcctctctggctcaagtttgttctcttcctcaaagctcttctccaacatatgga |
1732600 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 37519893 - 37519808
Alignment:
| Q |
28 |
agaacatcataatctctttcaagttgttttgtcttccatctagccctacggttctgaaaccatacagccacctgcctaggttgcaa |
113 |
Q |
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| T |
37519893 |
agaacaccataatctctttccaattgtttggtcttccatctagcacgacggttttgaaaccaaacagcaacttgtcttggttgcaa |
37519808 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 44593661 - 44593708
Alignment:
| Q |
135 |
ggttttcctctctggctcaagtttgttctcttcctcaaagctcttctc |
182 |
Q |
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| T |
44593661 |
ggttttcctctctggttcaagtttgttgtcctcctcaaagcttttctc |
44593708 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 17181871 - 17181959
Alignment:
| Q |
25 |
ttaagaacatcataatctctttcaagttgttttgtcttccatctagccctacggttctgaaaccatacagccacctgcctaggttgcaa |
113 |
Q |
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|||||||||||||| ||| |||| | || |||||||||||||| ||||| | || |||||||||| ||| || || ||||||||||| |
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| T |
17181871 |
ttaagaacatcatagtctttttccaactgctttgtcttccatcttgcccttctattttgaaaccatatagcaacttgtctaggttgcaa |
17181959 |
T |
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