View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2325_low_29 (Length: 208)
Name: NF2325_low_29
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 50985717 - 50985897
Alignment:
| Q |
14 |
attattctctcccaaatctgacatattttctgcagnnnnnnnctccttccaactcatattttcagcaattccagaaacttaaccccactccacgtgaatc |
113 |
Q |
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| T |
50985717 |
attattctctccaaaatctgacatattttctgcagaaacaaactccttccaactcatattttcagcaattccagaaacttaaccccactccacgtgaatc |
50985816 |
T |
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| Q |
114 |
tgacacgctcaatttcaggaaataaacctaaattaattacattacattacctaaaatttaatttcgaattttgaaattatt |
194 |
Q |
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| T |
50985817 |
tgacacgctcaatttcaggaaataaacctaaattaattacattacattacctaaaatttaatttcgaattttgaaattatt |
50985897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 51088851 - 51089031
Alignment:
| Q |
14 |
attattctctcccaaatctgacatattttctgcagnnnnnnnctccttccaactcatattttcagcaattccagaaacttaaccccactccacgtgaatc |
113 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51088851 |
attattctctccaaaatctgacatattttctgcagaaacaaactccttccaactcatattttcagcaattccagaaacttaaccccactccacgtgaatc |
51088950 |
T |
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| Q |
114 |
tgacacgctcaatttcaggaaataaacctaaattaattacattacattacctaaaatttaatttcgaattttgaaattatt |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51088951 |
tgacacgctcaatttcaggaaataaacctaaattaattacattacattacctaaaatttaatttcgaattttgaaattatt |
51089031 |
T |
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