View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2325_low_5 (Length: 472)
Name: NF2325_low_5
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2325_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 161 - 378
Target Start/End: Complemental strand, 12058257 - 12058041
Alignment:
| Q |
161 |
ataagaaagcaatggatgtaaattagatctataagctgaaactgagactaaatggtgaaattgctaagtataaggtaaagttggtggcaagaggtttcct |
260 |
Q |
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| T |
12058257 |
ataagaaagcaatggatgtaaattaaatctataagctgaaactgagactaaatggtgaaattgctaagtataaggtaaagttggtggcaagaggtttcct |
12058158 |
T |
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| Q |
261 |
ttgaaatccaggtattggtttcaatgaggtatatgcactagttgtaaggcttgaaacaattagaatagttgtggccataacaacatataaaggttggaag |
360 |
Q |
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| T |
12058157 |
ttgaaatccaggtattggtttcaatgaggtatatgcactagttgtaaggcttgaaacaatta-aatagttgtggccataacaacatataaaggttggaag |
12058059 |
T |
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| Q |
361 |
atgcattaccttgatgta |
378 |
Q |
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| T |
12058058 |
atgcattaccttgatgta |
12058041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 12059552 - 12059402
Alignment:
| Q |
15 |
ataggggaattgatgatggttgaaacaaaaccaatcaacttgaatgaagcaatgaaggattcaaattggttagtagttatgaaattggagtttaaataca |
114 |
Q |
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| T |
12059552 |
ataggggaagttatgatggttgaaacaaaaccaatcaacttgaatgaagcaatgaaggattcaaattggttagtagttatgaaattggagtttaaataca |
12059453 |
T |
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| Q |
115 |
tagagaagaatagaacatgcgagcagtgagcttgtaatcgggtatgataag |
165 |
Q |
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| T |
12059452 |
tagagaagaatagaacatgtgagcagtgagcttgtaatcgggtatgataag |
12059402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 12054523 - 12054442
Alignment:
| Q |
374 |
atgtaaagtatacatttttgaatggtcctttagatgaagaaccttgagtgaagaaaccaccaag-ttttgagatcaaagcac |
454 |
Q |
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| T |
12054523 |
atgtaaagtatacatttttgaatggtcctttagatggagaaccttgagtcaagaaaccaccaagtttttgagatcaaagcac |
12054442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 190 - 408
Target Start/End: Original strand, 6133658 - 6133878
Alignment:
| Q |
190 |
tataagctgaaactgagactaaatggtgaaattgctaagtataaggtaaagttggtggcaagaggtttcctttgaaatccaggtattggtttcaatgagg |
289 |
Q |
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| T |
6133658 |
tataagctaaaattgagaccaaatggtgaaatttctaa-tataaggaaaaactggtagcaagaggtttccttcaaaatctaggtattgatttaaatgagg |
6133756 |
T |
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| Q |
290 |
tatatgcactagttgtaa---ggcttgaaacaattagaatagttgtggccataacaacatataaaggttggaagatgcattaccttgatgtaaagtatac |
386 |
Q |
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| T |
6133757 |
attatgcacaagttgcaacaaggcttaaaacaattagaatagtggttgccataacaagatataaaggttggaaaatgcatcaacttgatgtaaagtctgc |
6133856 |
T |
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| Q |
387 |
atttttgaatggtcctttagat |
408 |
Q |
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| T |
6133857 |
attttttaatggtccattagat |
6133878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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