View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2325_low_6 (Length: 464)

Name: NF2325_low_6
Description: NF2325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2325_low_6
NF2325_low_6
[»] chr5 (17 HSPs)
chr5 (13-449)||(8528477-8528932)
chr5 (181-444)||(9074845-9075109)
chr5 (295-449)||(8535333-8535487)
chr5 (295-412)||(1600437-1600554)
chr5 (178-287)||(8535183-8535294)
chr5 (295-386)||(8677637-8677728)
chr5 (295-387)||(8548273-8548365)
chr5 (295-386)||(8644044-8644135)
chr5 (297-386)||(8636701-8636790)
chr5 (14-88)||(8535045-8535122)
chr5 (134-287)||(8548409-8548562)
chr5 (331-386)||(8641242-8641297)
chr5 (402-446)||(2856974-2857018)
chr5 (402-446)||(2874584-2874628)
chr5 (298-386)||(9003305-9003393)
chr5 (214-283)||(1600601-1600670)
chr5 (402-446)||(2845147-2845191)
[»] chr4 (1 HSPs)
chr4 (13-449)||(9442627-9443093)
[»] scaffold0627 (1 HSPs)
scaffold0627 (295-390)||(4492-4587)
[»] chr7 (2 HSPs)
chr7 (320-444)||(35779694-35779818)
chr7 (295-388)||(48362030-48362128)
[»] chr1 (1 HSPs)
chr1 (295-424)||(5130638-5130767)
[»] chr6 (1 HSPs)
chr6 (295-388)||(16716179-16716272)


Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Original strand, 8528477 - 8528932
Alignment:
13 gaactaaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctccaacatgtcgttgt 109  Q
    ||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8528477 gaactaaaaatataacaaatatatacaacatcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctccaacatgtcgttgt 8528576  T
110 gagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaactt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8528577 gagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaacataggaaactt 8528676  T
210 acacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt----------------taaaat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||    
8528677 acacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagattcaattgccaataaaaataaaat 8528776  T
294 tttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8528777 tttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatt 8528876  T
394 tatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8528877 tatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt 8528932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 181 - 444
Target Start/End: Complemental strand, 9075109 - 9074845
Alignment:
181 ttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaacc 279  Q
    |||||||||||||| ||||||| |||||| || | |||||||||||| ||||  || ||||||| ||| ||||||||||||||||| ||||  || ||      
9075109 ttaaaatataagtggtaacataagaaactcactcgagtccctttgaaaactcatcttatgattaaaattaattactatgacttgtacggaaa-ataaagt 9075011  T
280 atcagatttaaaatt-ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggat 378  Q
    || |||    | ||| ||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||    
9075010 attagaagctacattcttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatatgtgggat 9074911  T
379 tacttcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttc 444  Q
    |||||||||| | |||    |||||||||||||||||||||||||||| |||||||| ||||||||    
9074910 tacttcaaaaaactttgaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttc 9074845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 295 - 449
Target Start/End: Original strand, 8535333 - 8535487
Alignment:
295 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 394  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
8535333 ttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaattt 8535432  T
395 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt 449  Q
       | |||||| | |||||||||||||| ||| |||||||| |||||||| ||||    
8535433 gaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagt 8535487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 295 - 412
Target Start/End: Complemental strand, 1600554 - 1600437
Alignment:
295 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 394  Q
    ||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||| ||| |    
1600554 ttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatct 1600455  T
395 atccgactcccatgaatt 412  Q
       |||||||||||||||    
1600454 gaacgactcccatgaatt 1600437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 8535183 - 8535294
Alignment:
178 agtttaaaatataagtg-taacataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgac-ttgtaaggaagcatc 275  Q
    |||||||||||||| || |||||||||||||||||| |||| |||||||||||||| || ||||||| |||||||||||||||| |||||||| ||||||    
8535183 agtttaaaatataactggtaacataggaaacttacagaagttcctttgaatactcgtcttatgattaaaatcaattactatgactttgtaagggagcatc 8535282  T
276 aaccatcagatt 287  Q
    ||||||||||||    
8535283 aaccatcagatt 8535294  T

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Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 295 - 386
Target Start/End: Original strand, 8677637 - 8677728
Alignment:
295 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 386  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||||||||||  ||||| |||| |||||    
8677637 ttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaa 8677728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 387
Target Start/End: Complemental strand, 8548365 - 8548273
Alignment:
295 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaa 387  Q
    |||| |||||||||||||||| |||||||||||| |||||||||  |||||||||||||| |||||||||||||| ||| | |||||||||||    
8548365 ttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttcaaa 8548273  T

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Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 386
Target Start/End: Original strand, 8644044 - 8644135
Alignment:
295 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 386  Q
    ||||||||||||||||||||| | |||| ||||| ||||||||| ||||||||||||||| |||||||||||||  ||||| |||| |||||    
8644044 ttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaa 8644135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 386
Target Start/End: Original strand, 8636701 - 8636790
Alignment:
297 accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 386  Q
    ||||||||||||||||||| ||||| |||||| |||||||||  |||||||||||||| |||||||||||||  ||||| |||| |||||    
8636701 accttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaa 8636790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 8535045 - 8535122
Alignment:
14 aactaaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaac 88  Q
    ||||||| |||||||||||||| |||   ||||||||||||||| ||| ||||||||||||||||||||||| |||||    
8535045 aactaaatttataacaaatataaacaacttcataaatatattagttgtaaaagcaaatgattgacgaaacatcacaac 8535122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 8548562 - 8548409
Alignment:
134 taacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagt-gtaacataggaaacttacacaagtccctttgaatactcg 232  Q
    |||||||| | |||| ||| ||||||| |||||  ||||||| ||||||||| ||||||  |||||| |  ||| | ||||| | ||||||||||||||     
8548562 taacaacaagccttcctttatccaaatagaatgccaaaataggaagtttaaa-tataagcagtaacacaaaaaattcacacatgaccctttgaatactca 8548464  T
233 actcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt 287  Q
     || ||||||| ||| ||||||||||| || || || ||||||||||||||||||    
8548463 tcttatgattaaaattaattactatgatttttatgggagcatcaaccatcagatt 8548409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 8641242 - 8641297
Alignment:
331 tcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 386  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||| ||||||||||    
8641242 tcctttcacgacatccttcaatgagattagacttggaatatgtggaattacttcaa 8641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 2857018 - 2856974
Alignment:
402 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 446  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||    
2857018 tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt 2856974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 2874628 - 2874584
Alignment:
402 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 446  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||    
2874628 tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt 2874584  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 9003305 - 9003393
Alignment:
298 ccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 386  Q
    |||||||| || |||||  ||||||| |||| |||| || | | | ||||||||||| |||||||||||||| ||||| ||||||||||    
9003305 ccttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcaa 9003393  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 1600670 - 1600601
Alignment:
214 aagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatca 283  Q
    ||||||||||||| ||| | || ||||||| ||| ||||||||||||||||| || | |||| |||||||    
1600670 aagtccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcgaccatca 1600601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 2845191 - 2845147
Alignment:
402 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 446  Q
    |||| ||||||||||||||||||||| ||| ||| ||||||||||    
2845191 tcccttgaattcgaaaaactttgaactcatgtttctcaggttcgt 2845147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 449
Target Start/End: Original strand, 9442627 - 9443093
Alignment:
13 gaactaaaattataacaaatatataca---tcataaatatattagctgtgaaagcaaatgattgacgaaacatgacaacctttctc-----------caa 98  Q
    ||||||||| |||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||           |||    
9442627 gaactaaaaatataacaaatatatacaacatcataaatatattagctgcgaaagcaaatgattgacgaaacatcacaacctttctccaacatgtctccaa 9442726  T
99 catgtcgttgtgagaatatatctacctaagtaacctaacaacatgtcttcttttctccaaatggaatggaaaaatagtaagtttaaaatataagtgtaac 198  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
9442727 catgtcgttgtgagaatatatcaaccgaagtaacctaacaacatgttttcttttctccaaatggaatggcaaaatagtaagtttaaaatataagtgtaac 9442826  T
199 ataggaaacttacacaagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatcagatt----------- 287  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||               
9442827 ataggaaacttacacaagtccctttgaatactcatctcatgattacaatcaattactatgacttgtaaagaagcatcaaccatcagattcaattgccaat 9442926  T
288 -----taaaattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattact 382  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
9442927 aaaaataaaattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggattact 9443026  T
383 tcaaaataatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt 449  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9443027 tcaaaataatttttccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt 9443093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 4492 - 4587
Alignment:
295 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata 390  Q
    ||||||||||||||||||||  |||||||||||| |||||||||   ||||||||||||| |||||||||||||| ||||| ||||||||||||||    
4492 ttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaaaata 4587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 320 - 444
Target Start/End: Original strand, 35779694 - 35779818
Alignment:
320 tcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaa 419  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||| | | |||   ||| ||||| ||||||||||||    
35779694 tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa 35779793  T
420 ctttgaacccatatttttcaggttc 444  Q
    ||||| | |||||||| ||||||||    
35779794 ctttgtatccatatttctcaggttc 35779818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 388
Target Start/End: Complemental strand, 48362128 - 48362030
Alignment:
295 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaa-----attagacttggaatgtgtgggattacttcaaaa 388  Q
    |||||||||||||| |||||  ||||| |||||  |||||||||| |||||||||||||||     |||||||||||||| ||||||||||||||||||    
48362128 ttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtgggattacttcaaaa 48362030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 295 - 424
Target Start/End: Original strand, 5130638 - 5130767
Alignment:
295 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 394  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| || |||||| | |||||||||||||| ||| ||||| ||||||||||  |  |||    
5130638 ttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatctttttt 5130737  T
395 atccgactcccatgaattcgaaaaactttg 424  Q
       | | |||||||||||||||||||||||    
5130738 gaacaagtcccatgaattcgaaaaactttg 5130767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 388
Target Start/End: Original strand, 16716179 - 16716272
Alignment:
295 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaa 388  Q
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16716179 ttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactttaaaa 16716272  T

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