View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2326_high_16 (Length: 232)
Name: NF2326_high_16
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5188494 - 5188274
Alignment:
| Q |
1 |
tacaaggaatattccgatgacataatattaattgacttggaatacttaattctcataaaaataagcatgctgaagtacgttgccttgcatatgccatata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5188494 |
tacaaggaatattccgatgacataatattaattgacttggaatacttaattctcataaaaataagcatgctgaagtacgttgccttgcatatgccatata |
5188395 |
T |
|
| Q |
101 |
gtatattcttttagcaaatagtagatgccaacaataatagtggag-nnnnnnnnnggaagaagaaagaaaaataatagtgaagttatcgaatgggttggt |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5188394 |
gtatatccttttagcaaatagtagatgccaacaataatagtggagttttttttttggaagaagaaagaaaaataatagtgaagttatcgaat-ggttggt |
5188296 |
T |
|
| Q |
200 |
ctccctctaagatattcttgga |
221 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
5188295 |
ctccctctaagatatttttgga |
5188274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University