View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2326_high_17 (Length: 208)
Name: NF2326_high_17
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_high_17 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 35989889 - 35989815
Alignment:
| Q |
134 |
tgtaacagtgagctgnnnnnnngaagtgaagttgtgtacctgagagagaaaaaggtaagtgaaggagaagagaaa |
208 |
Q |
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| T |
35989889 |
tgtaacagtgagctgaaaaaaagaagtgaagttgtgtacctgagagagaaaaaggtaagtgaaggagaagagaaa |
35989815 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 35990012 - 35989951
Alignment:
| Q |
7 |
agtagcaaaggctcaagaactgtaaatcctagcaaaacagaattaatattacatgcacattg |
68 |
Q |
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|||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35990012 |
agtaacaaagactcaagaactgtaaatcccagcaaaacagaattaatattacatgcacattg |
35989951 |
T |
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