View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2326_high_2 (Length: 422)
Name: NF2326_high_2
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 40998625 - 40998229
Alignment:
| Q |
18 |
gtaagtagtggagccaattatataatcttttgtgtaaattgatctgtctactcaaactatatttgctagatgcccaaaccaccaataggggtgtgttgtg |
117 |
Q |
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| T |
40998625 |
gtaagtagtggagccaattatataatcttttgtgtaaattgatctgtctactcaaactatatttgctagatgcccaaaccaccaataggggtgcgttctg |
40998526 |
T |
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| Q |
118 |
tataattataaaaaggttaaaatgtgtttttcgtccatacaaatatgatgaatttgagtcttggatggattgcttggctcttggcccttgggtcaactta |
217 |
Q |
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| T |
40998525 |
tataattataaaaaggttaaaatgtgtttttggtccttacaaatatgatgagtttgagtcttggatggattgcttggctcttggcccttgggtcaactta |
40998426 |
T |
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| Q |
218 |
agttttcaaaatgtg---tcacttccgtaaaattgaattagcttgccaaacacttgattatgggagttttcaaatggggacggcgagggttgagagtggg |
314 |
Q |
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||||||||||||||| |||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40998425 |
agttttcaaaatgtgtcatcacctccgtaaaattgaattagcataccaaacacttaattatgggagttttcaaatggggacggcgagggttgagagtggg |
40998326 |
T |
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| Q |
315 |
ggaagagagttgtttgccatggtgtgtttgaatcacgataaatagacaatagcaaggtaatgaaaataagatcgaattgatcaatctaagtgatgat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40998325 |
ggaagagagttgtttgccatggtgtgtttgaatcacgataaatagacaatagcaaggtaataaaaataagatcgaattgatcaatctaagtgatgat |
40998229 |
T |
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