View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2326_high_3 (Length: 348)
Name: NF2326_high_3
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 15429863 - 15430193
Alignment:
| Q |
1 |
ctaaagtgtcatcttcaattggtcatttgaagagtttaaggtatttggatctttctcatggtcaatttgaaactcttccagaatccatatgtaaattgtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
15429863 |
ctaaagtgtcatcttcaattggtcatttgaagagtttaaggtatttggatctttctcatggtcaatttgaaactcttccaaaatccatatgtaagttgtg |
15429962 |
T |
|
| Q |
101 |
gaatttacaaattttaaaattagactattgttttagcctacaaaaattgcctaataatttgatgcacttgaaagctctacaacatctatccttaaaaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15429963 |
gaatttacaaattttaaaattagactattgttttagcttacaaaaattgcctaataatttgatacacttgaaagctctacaacatctatccttaaaaaac |
15430062 |
T |
|
| Q |
201 |
tgccgcgagctatcaagtttacctcatcaaataggggagttgacttccttgaagactttgagcatgtatgtagttggaaggaaaagagggttccttttgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15430063 |
tgccgcgagctatcaagtttacctcatcaaatagggaagttgacttccttgaagactttgagcatgtatgtagttggaaggaaaagagggttccttttgg |
15430162 |
T |
|
| Q |
301 |
cagaattaggacaattaaatcttaaaggaga |
331 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
15430163 |
cagaattaggacaattaaatcttaaaggaga |
15430193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 15421987 - 15422176
Alignment:
| Q |
1 |
ctaaagtgtcatcttcaattggtcatttgaagagtttaaggtatttggatctttctcatggtcaatttgaaactcttccagaatccatatgtaaattgtg |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||| |
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| T |
15421987 |
ctaaactgtcatcttcaattggtcatttgaagagtttaaggtacttggatctttctgatggtaaatttgaaactcttccaaaatccatatgtaagttgtg |
15422086 |
T |
|
| Q |
101 |
gaatttacaaattttaaaattagactattgttttagcctacaaaaattgcctaataatttgatgcacttgaaagctctacaacatctatc |
190 |
Q |
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|||||||||| |||| ||||||||| ||||| | || ||||| ||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
15422087 |
gaatttacaagttttgaaattagaccattgtagaaaactccaaaatttgcctaataatttgatacgcttgaaagctctacaacatctatc |
15422176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 15320697 - 15320379
Alignment:
| Q |
10 |
catcttcaattggtcatttgaagagtttaaggtatttggatctttctcatggtcaatttgaaactcttccagaatccatatgtaaattgtggaatttaca |
109 |
Q |
| |
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|||||||||||||| |||| || | ||||||||||| || ||||| ||| | ||||||| |||||| |||||||||||| | ||||||||||| || |
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| T |
15320697 |
catcttcaattggtaatttaaaatatctaaggtatttgaatttttcttcgggtgattttgaaattcttccggaatccatatgtcagttgtggaatttgca |
15320598 |
T |
|
| Q |
110 |
aattttaaaattagactattgttttagcctacaaaaattgcctaataatttgatgcacttgaaagctctacaacatctatccttaaaaaactgccgcgag |
209 |
Q |
| |
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||||||||| ||||| | |||| ||| || || | |||||||||| ||||| || |||||| || |||||||| |||| || | |||| | |
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| T |
15320597 |
aattttaaagttagatcactgttatagtctccagtacttgcctaatagtttgacacaattgaaatctttacaacatatatctttgattggctgct---at |
15320501 |
T |
|
| Q |
210 |
ctatcaagtttacctcatcaaataggggagttgacttccttgaagactttgagcatgtatgtagttggaaggaaaagagggttccttttggcagaattag |
309 |
Q |
| |
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|||||||||| || | ||||||||| ||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||||| ||||||| |
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| T |
15320500 |
atatcaagtttgccgcgccaaatagggaagttgacttccttgaggactttgagcatgtatatagttggcaacaaaagagggttccttttggcggaattag |
15320401 |
T |
|
| Q |
310 |
gacaattaaatcttaaaggaga |
331 |
Q |
| |
|
||||| |||||||||||||||| |
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| T |
15320400 |
gacaactaaatcttaaaggaga |
15320379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 320
Target Start/End: Complemental strand, 15082767 - 15082475
Alignment:
| Q |
22 |
gtcatttgaagagtttaaggtatttggatctttctcatggtcaatttgaaactcttccagaatccatatgtaaattgtggaatttacaaattttaaaatt |
121 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||| | ||| ||||||| |||||||||||||||||||| ||||| |
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| T |
15082767 |
gtcatttgaagtttttaaggtacttggatctttctgtcggtgaatttgaaactcttccggcatctctatgtaagttgtggaatttacaaattttgaaatt |
15082668 |
T |
|
| Q |
122 |
agactattgttttagcctacaaaaattgcctaataatttgatgcacttgaaagctctacaacatctatccttaaaaaactgccgcgagctatcaagttta |
221 |
Q |
| |
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| |||||||| | ||| | || |||||||||||||||||| ||||||||||||||||||||||||| || |||| | ||||||||||| |
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| T |
15082667 |
acactattgtagaaacctccgaatattgcctaataatttgatacacttgaaagctctacaacatctatatttgtttggctgcttcagattatcaagttta |
15082568 |
T |
|
| Q |
222 |
cctcatcaaataggggagttgacttccttgaagactttgagcatgtatgtagttgg-aaggaaaagagggttccttttggcagaattaggacaattaaat |
320 |
Q |
| |
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|||| | |||||| | ||||||||| ||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||| |
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| T |
15082567 |
cctcccaatatagggaacttgacttccctgaggactttgagcatgtatgtagttggcaagggaaa-------ccttttggcagaattaggacagttaaat |
15082475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 17927180 - 17927088
Alignment:
| Q |
239 |
gttgacttccttgaagactttgagcatgtatgtagttggaaggaaaagagggttccttttggcagaattaggacaattaaatcttaaaggaga |
331 |
Q |
| |
|
|||||||||| | | |||||| ||||| ||||| ||||| | ||||||||||| |||||||| ||||||||||||| |||| ||||||||||| |
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| T |
17927180 |
gttgacttccctaaggactttaagcatatatgttgttggtaagaaaagagggtaccttttggaagaattaggacaactaaaccttaaaggaga |
17927088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 15346771 - 15346652
Alignment:
| Q |
70 |
aaactcttccagaatccatatgtaaattgtggaatttacaaattttaaaattagactattgttttagcctacaaaaattgcctaataatttgatgcactt |
169 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| || |||||||| ||||||||||| | || ||||| |||||||||| | || | ||||| |
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|
| T |
15346771 |
aaactcttccagaatccttatgtacgttgtggaatttgcagattttaaagctagactattgtcaaaatctccaaaagttgcctaatagtctggtacactt |
15346672 |
T |
|
| Q |
170 |
gaaagctctacaacatctat |
189 |
Q |
| |
|
|||||||||||||| ||||| |
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| T |
15346671 |
gaaagctctacaacgtctat |
15346652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 15422193 - 15422247
Alignment:
| Q |
135 |
agcctacaaaaattgcctaataatttgatgcacttgaaagctctacaacatctat |
189 |
Q |
| |
|
||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
15422193 |
agcctccaacaattgcctaataatttgatacacttgaaagctctacaacatctat |
15422247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 15354107 - 15353988
Alignment:
| Q |
70 |
aaactcttccagaatccatatgtaaattgtggaatttacaaattttaaaattagactattgttttagcctacaaaaattgcctaataatttgatgcactt |
169 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| || |||||||| ||||| |||||| |||||||| || ||||||| | || | ||||| |
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|
| T |
15354107 |
aaactcttccagaatccttatgtacgttgtggaatttgcagattttaaagttagattattgtcaagaactacaaaagttccctaatagtctggtacactt |
15354008 |
T |
|
| Q |
170 |
gaaagctctacaacatctat |
189 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
15354007 |
gaaatctctacaacatctat |
15353988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 15335464 - 15335339
Alignment:
| Q |
7 |
tgtcatcttcaattggtcatttgaagagtttaaggtatttggatctttctcatggtcaatttgaaactcttccagaatccatatgtaaattgtggaattt |
106 |
Q |
| |
|
||||||||||||||||| | | ||| | ||||||| ||| |||| ||| ||||| | || ||||||| ||| ||||| |||||| |||||||||||| |
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|
| T |
15335464 |
tgtcatcttcaattggtagtctaaagtatctaaggtacttgaatctatctgatggtaagttcaaaactctaccaaaatccttatgtacattgtggaattt |
15335365 |
T |
|
| Q |
107 |
acaaattttaaaattagactattgtt |
132 |
Q |
| |
|
||| ||||| || |||||| |||||| |
|
|
| T |
15335364 |
acagattttgaagttagacaattgtt |
15335339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 331
Target Start/End: Complemental strand, 8186565 - 8186478
Alignment:
| Q |
244 |
cttccttgaagactttgagcatgtatgtagttggaaggaaaagagggttccttttggcagaattaggacaattaaatcttaaaggaga |
331 |
Q |
| |
|
||||| ||| |||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||| |||||| || || |||||||| |
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|
| T |
8186565 |
cttccctgaggactttaagcatgtatgttgttggaaagaaaagagggttacttttggcagaattagaacaattgaacctcaaaggaga |
8186478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 8186800 - 8186715
Alignment:
| Q |
9 |
tcatcttcaattggtcatttgaagagtttaaggtatttggatctttctcatggtcaatttgaaactcttccagaatccatatgtaa |
94 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||| ||| |||||||| | ||| | || ||||||||||||||||| ||||||| |
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|
| T |
8186800 |
tcatcttcaattggtcgtttgaaatatctaaggtacttgaatctttctaacggtgacttccaaactcttccagaatccttatgtaa |
8186715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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