View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2326_low_13 (Length: 324)
Name: NF2326_low_13
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_low_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 7901939 - 7901618
Alignment:
| Q |
1 |
ttctctagctggctgtgggaaaggaaacggtgttccaagtttaggcataattactattgccccgtagacagtggccctaagccagaaaatgtgtgcatgc |
100 |
Q |
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| T |
7901939 |
ttctctagctggctgtgggaaaggaaatggtgttccaagtttaggcataattactattgccccgtagacagtggccctaagccagaaaatgtgtgcatgc |
7901840 |
T |
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| Q |
101 |
caccatagtgttcctctttgcccagtaacgttgaattcgtaagtatagctgtttccggtctgtatcggacactgtgtgatgtaagccggtccatccgccc |
200 |
Q |
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| T |
7901839 |
caccatagtgttcctctttgcccagtaacgttgaattcgtaagtatagctgtttccggtctgtatcggacactgtgtgatgtaagccggtccatccgccc |
7901740 |
T |
|
| Q |
201 |
aaccattacgatattgtttaagtccatgcctataacaagcatatatacgattgttagagaaaaacatgtattttctagtgttaaaaacttcacctatatg |
300 |
Q |
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| T |
7901739 |
aaccattacgatattgtttaagtccatgcctataacaagcatatatacgattgttagagaaaaacatgtattttctagtgttaaaaacttcacc--tatg |
7901642 |
T |
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| Q |
301 |
tatgtaattgattcgtgaaattca |
324 |
Q |
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||| ||||||||| |||||||||| |
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| T |
7901641 |
tatttaattgatttgtgaaattca |
7901618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7891533 - 7891303
Alignment:
| Q |
1 |
ttctctagctggctgtgggaaaggaaacggtgttccaagtttaggcataattactattgccccgtagacagtggccctaagccagaaaatgtgtgcatgc |
100 |
Q |
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| T |
7891533 |
ttctctagctggttgtggaaaaggaaaaggggttcctggtttaggcatgataacaattgcaccataaacagtagcccttaaccaaagaatatgagcatgc |
7891434 |
T |
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| Q |
101 |
caccatagtgttcctctttgcccagtaacgttgaattcgtaagtatagctgtttccggtctgtatcggacactgtgtgatgtaagccggtccatccgccc |
200 |
Q |
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| T |
7891433 |
caccacaaagttcctctttgtcctgtcacattgaagtcatatgtgtagcttccaccagtttgaattggacattgagtaatataagctggtccatcagccc |
7891334 |
T |
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| Q |
201 |
aaccattacgatattgtttaagtccatgcct |
231 |
Q |
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| T |
7891333 |
aaccattgcgatactgtttaagtccatgcct |
7891303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 31213918 - 31213672
Alignment:
| Q |
1 |
ttctctagctggctgtgggaaaggaaacggtgttccaagtttaggcataattactattgccccgtagacagtggccctaagccagaaaatgtgtgcatgc |
100 |
Q |
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|
||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
31213918 |
ttctctagctggctgtgggaaaggaaa-ggtattccaagtttaggcatgattactattgccccatagacagtggccctcagccagaaaatgtgtgcatgc |
31213820 |
T |
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| Q |
101 |
caccatagtgtt---cctctttgcccagtaacgttgaattcgtaagtatagctgtttccggtctgtatcggacactgtgtgatgtaagccggtccatccg |
197 |
Q |
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|||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213819 |
caccatagtgttgttcctcttttcccagtaacgttgaatttgtaagtatagctgtttccggtctgtatcggacactgtgtgatgtaagccggtccatccg |
31213720 |
T |
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| Q |
198 |
cccaaccattacgatattgtttaagtccatgcctataacaagcatata |
245 |
Q |
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|| ||||||||| |||||||||||||||||||||| | ||||||||| |
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| T |
31213719 |
ccaaaccattacattattgtttaagtccatgcctatgataagcatata |
31213672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 31213672 - 31213632
Alignment:
| Q |
263 |
aacatgtattttctagtgttaaaaacttcacctatatgtat |
303 |
Q |
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| T |
31213672 |
aacatgtattttctagtgttaaaaacttcacctatttgtat |
31213632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 55603191 - 55603227
Alignment:
| Q |
199 |
ccaaccattacgatattgtttaagtccatgcctataa |
235 |
Q |
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| T |
55603191 |
ccaaccattgcgatattgtttaagtccatgcctataa |
55603227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 11659228 - 11659264
Alignment:
| Q |
199 |
ccaaccattacgatattgtttaagtccatgcctataa |
235 |
Q |
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||||||||| ||||| ||||||||||||||||||||| |
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| T |
11659228 |
ccaaccattgcgatactgtttaagtccatgcctataa |
11659264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 53615271 - 53615235
Alignment:
| Q |
199 |
ccaaccattacgatattgtttaagtccatgcctataa |
235 |
Q |
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||||||||| ||||| ||||||||||||||||||||| |
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| T |
53615271 |
ccaaccattgcgatactgtttaagtccatgcctataa |
53615235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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