View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2326_low_15 (Length: 294)
Name: NF2326_low_15
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 94 - 285
Target Start/End: Original strand, 35933600 - 35933791
Alignment:
| Q |
94 |
tgatacccatgtatccaaaagaaaatcactgtcaagacccactccacgattgggaaacaatatagttcttacttttttggactccaggaacatagcacgg |
193 |
Q |
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| T |
35933600 |
tgatacccatgtatgcaaaagaaaatcactgtcaagacccactccacgattgggaaacaatatagttcttacttttttggactccaggaacatagcacgg |
35933699 |
T |
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| Q |
194 |
tcaagtgaacatttttcaacaattgacacatgcctcacttgcttcagtatattccgagtatgggaatttacaagaacacactcctcctttgc |
285 |
Q |
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| T |
35933700 |
tcaagtgaacatttttcaacaattgacacatgcctcacttgcttcggtatattccgagtatgggaatttactagaacacactcctcctttgc |
35933791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 35932991 - 35933110
Alignment:
| Q |
20 |
aatttagcaattgaatcgggtatagtatccattgaagaatgactcaaatctaaacttcgtaagcatttgtatcttgatacccatgtatccaaaagaaaat |
119 |
Q |
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| T |
35932991 |
aatttagcaattgaaacgggtagagtatcgatcgacgagtcacttaaatctacaacccgttagtatttgtatcttgaaatccatgtatccaaaagagaat |
35933090 |
T |
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| Q |
120 |
cactgtcaagacccactcca |
139 |
Q |
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| T |
35933091 |
cacagtcaagacccactcca |
35933110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 18124774 - 18124852
Alignment:
| Q |
84 |
atttgtatcttgatacccatgtatccaaaagaaaatcactgtcaagacccactccacgattgggaaacaatatagttct |
162 |
Q |
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| T |
18124774 |
atttgtatcttgatatccatttatacaaaagagattcactatcaagacccactccatcaataggaaacaatatacttct |
18124852 |
T |
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