View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2326_low_2 (Length: 603)
Name: NF2326_low_2
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 593
Target Start/End: Complemental strand, 7628288 - 7627708
Alignment:
| Q |
18 |
atcatatatagttaaatccctaaaatgccatgctaaatatcacaatggagctcaatattagtggtatattagcttgttctcttttttcttagagaagtgg |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
7628288 |
atcatatatagttaaatccctcaaatgccatgctaaatatcacaatggagctcaatattagtggtatattagtttgttctcttttttcttagagacgtgg |
7628189 |
T |
|
| Q |
118 |
tatattagnnnnnnnnnnnn-----aaaagagggggtgttatattagcttcttaatctatataaaaatagatcatattacttacttaaatacattcatat |
212 |
Q |
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| T |
7628188 |
tatattagtttttttttttttttttaaaagagggggtgttatattagcttcttagtctatataaaaatagatcatattacttacttaaatacattcatat |
7628089 |
T |
|
| Q |
213 |
taaatagtttttaagtaggctatgatatcatatcaagcttttaaaaagatcatatactaattaagcctattgcacgttgtaggttaggtctaaatcttga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7628088 |
taaatagtttttaagtaggctatgatatcatatcaagcttttaaaaagatcatatactaattaagcctattgcacgttgtaggttaggtctaaatcttga |
7627989 |
T |
|
| Q |
313 |
acttttttgactaagtcaagtttagacatagtaaattctaactcggtctagtctattcatatacccctatgtagggccattaatttaagagatttgagaa |
412 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7627988 |
acctttttgactaagtcaagtttagacatagtaaattctaactcggtctagtctattcataaacccctatgtagggccattaatttaagagatttgagaa |
7627889 |
T |
|
| Q |
413 |
ataataatttgagttcttagaagagataagtcatgtcattgtgaccgttagttcagttgacaatgtcgatgtagtaagtatggacactttcactcttatt |
512 |
Q |
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| T |
7627888 |
ataataatttgagttcttagaagagataagtcatgtcattgtgaccgttggttcagttgacaatgtcgatgtagtaagtatggacactttcactcttatt |
7627789 |
T |
|
| Q |
513 |
gaaatttaggacctcccatttgtatgtgtgtgagtttctattgttttgtatgtggaaaaaatgggtaagaaagatgatgat |
593 |
Q |
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| T |
7627788 |
gaaatttaggacctcgcatttgtatgtgtgtgagtttctattgttttgtatgtggaaaaaatgggtaggaaagatgatgat |
7627708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 7628853 - 7628496
Alignment:
| Q |
18 |
atcatatatagttaaatccctaaaatgccatgctaaatatcacaatggagctcaatattagtggtatattagcttgttctcttt------tttcttagag |
111 |
Q |
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|||||||||||| | ||| |||||||| |||||||||||||| |||| |||| |||||||||||||||||||||| |||| ||| ||| |||||| |
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| T |
7628853 |
atcatatatagtcagatctctaaaatgtcatgctaaatatcaaaatgaagcttaatattagtggtatattagcttcttctttttctatttttttttagag |
7628754 |
T |
|
| Q |
112 |
aagtggtatattagnnnnnnnnnnnnaaaagagggggtgttatattagcttcttaatctatataaaaatagatcatattacttacttaaatacattcata |
211 |
Q |
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|| ||||||||| | ||||| || ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| ||| || |
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| T |
7628753 |
aaatggtatattggtttttttttttttaaagaaggagtgttatattagcttcttagtctatataaaaatatatcatattacttatttaaatacgttctta |
7628654 |
T |
|
| Q |
212 |
ttaaatagtttttaagtaggctatgatatcatatcaagcttttaaaaagatcatatactaattaagcctattgcacgttgtaggttaggtctaaatcttg |
311 |
Q |
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|||||||| |||||||||| |||| |||||||||||| | ||| |||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
7628653 |
ttaaatagcttttaagtagactatcatatcatatcaaacattttaaaagatcgtatattaattaagtctattgcacgttgtaggctaggtctaaatcttg |
7628554 |
T |
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| Q |
312 |
aacttttttgactaagtcaagtttagacatagtaaattctaactcggtctagtctatt |
369 |
Q |
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||| ||||||||||||||||||||| |||| ||||||||||||| | ||||||||||| |
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| T |
7628553 |
aacctttttgactaagtcaagtttaaacatcgtaaattctaacttgatctagtctatt |
7628496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 45950256 - 45950302
Alignment:
| Q |
185 |
catattacttacttaaatacattcatattaaatagtttttaagtagg |
231 |
Q |
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||||||||||| |||||||| ||||||| |||| ||||||||||||| |
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| T |
45950256 |
catattacttatttaaatacgttcatatgaaattgtttttaagtagg |
45950302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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