View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2326_low_21 (Length: 246)
Name: NF2326_low_21
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 11859671 - 11859900
Alignment:
| Q |
10 |
gtggtggtggtggtgacaactggattccagaagcaatggaaatgcttaagtttatctattacgacaattttcccacttatcagaagttatgctttgcata |
109 |
Q |
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| T |
11859671 |
gtggtggtcgtggtgacaactggattccgaaagcattagaaacgcttaagtttatctattacgacaaccttcccacttatcagaagttatgcttcgcata |
11859770 |
T |
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| Q |
110 |
ttgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacccagaacaacaatttggt |
209 |
Q |
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| T |
11859771 |
ttgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggacggctgaagggtttcttatcaatccagaacaacaatttggt |
11859870 |
T |
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| Q |
210 |
caagcttgtttcgaagacttcgttcctttg |
239 |
Q |
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| T |
11859871 |
caagcttgtttcaaagactttgttcctttg |
11859900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 11827528 - 11827765
Alignment:
| Q |
2 |
gaagcaaagtggtggtggtggtgacaactggattccagaagcaatggaaatgcttaagtttatctattacgacaattttcccacttatcagaagttatgc |
101 |
Q |
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| T |
11827528 |
gaagcatagtggtgttggtggtgaagaatggattcgggaagcactagaaaaggtgaagcttatctattacgacgatcttcccacttatcagaaattatgc |
11827627 |
T |
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| Q |
102 |
tttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacccagaacaac |
201 |
Q |
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| T |
11827628 |
tttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactggtgaagggtttcttatcaatccagaacaac |
11827727 |
T |
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| Q |
202 |
aatttggtcaagcttgtttcgaagacttcgttcctttg |
239 |
Q |
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| T |
11827728 |
aatttggtcatgcttgtttcgaagactttgttcctttg |
11827765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 12038482 - 12038604
Alignment:
| Q |
62 |
tatctattacgacaattttcccacttatcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaa |
161 |
Q |
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| T |
12038482 |
tatctattacgaagatcttcccacgtatcagaagttgtgctttgcatattgttcattgtttccagaagattatttaattgatgccgagagattaattcaa |
12038581 |
T |
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| Q |
162 |
ctctggactgctgaagggtttct |
184 |
Q |
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| T |
12038582 |
ctttggacggctgaaggatttct |
12038604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 11902770 - 11902628
Alignment:
| Q |
93 |
aagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacc |
192 |
Q |
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| T |
11902770 |
aagttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttctcaccattc |
11902671 |
T |
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| Q |
193 |
cagaacaacaatttggtcaagcttgtttcgaagacttcgttcc |
235 |
Q |
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| T |
11902670 |
cacaacaacaattttgtcgaccttgtttcaatgactttgttcc |
11902628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 11731429 - 11731508
Alignment:
| Q |
99 |
tgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagg |
178 |
Q |
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| T |
11731429 |
tgctttgcattttgttcattgtttccagaacatcatttgattgatgccgagagattaattcaactttggtttgctgaagg |
11731508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 11975068 - 11974974
Alignment:
| Q |
89 |
tcagaagttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttc |
183 |
Q |
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| T |
11975068 |
tcagaagttttgttttgaattttgttcattgtttcctcaagatcatttgattgatgtcgagagattaattcatctcttgacagcagaaggatttc |
11974974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 12038627 - 12038674
Alignment:
| Q |
192 |
ccagaacaacaatttggtcaagcttgtttcgaagacttcgttcctttg |
239 |
Q |
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| T |
12038627 |
ccagaacaacaatttggtcgagcttgtttcaacgactttgttcctttg |
12038674 |
T |
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