View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2326_low_22 (Length: 241)
Name: NF2326_low_22
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 41895746 - 41895514
Alignment:
| Q |
1 |
acatctcatcctgattgggccttttattctcgtgttcgttcacgtataactaccaacaattgagtaaaacatggttcaataatgttgcataacaaaatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41895746 |
acatctcatcctgattgggccttttattctcgtgttcgttcacgtataactaccaacaattgagtaaaacatggttcaataatgttgcataacaaaatgc |
41895647 |
T |
|
| Q |
101 |
agtggttatatgtgtgtgacgaactatgttttggagaaatgtttacttattttacaaaagacacttgtttcaatatgtg--tgtgaagttttgtaatttt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41895646 |
agtggttatatgtgtgtgacgaactatgttttggagaaatgtttacttattttacaaaagacacttgtttcaatatgtgtgtgtgaagttttgtaatttt |
41895547 |
T |
|
| Q |
199 |
ttcttcattgttggtattatgatcatacctatg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41895546 |
ttcttcattgttggtattatgatcatacctatg |
41895514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 41890844 - 41890734
Alignment:
| Q |
4 |
tctcatcctgattgggcc--ttttattctcgtgttcgttcacgtataactaccaacaattgagtaaaacatggttcaataatgttgcataacaaaatgca |
101 |
Q |
| |
|
||||||||| |||||| | |||||||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| |||||||||||| ||||| | |
|
|
| T |
41890844 |
tctcatcctcattggggcaattttattctcgtgttcgttcacttataacttctaacaattgagtggaacatcgttcaacgatgttgcataacgaaatgta |
41890745 |
T |
|
| Q |
102 |
gtggttatatg |
112 |
Q |
| |
|
|||||| |||| |
|
|
| T |
41890744 |
gtggttttatg |
41890734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University