View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2326_low_23 (Length: 240)
Name: NF2326_low_23
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30624168 - 30623947
Alignment:
| Q |
1 |
ttgaaccaaaatgcacaaatattcaaagaatcatcaacctcttattccaattccagcacttcaaattctcaaatcagcaatgaatcacaagaagtttcat |
100 |
Q |
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| T |
30624168 |
ttgaaccaaagtgcacaaatattcaaagaatcatcaacctcttattccaattccagcacttcaaattctcaaatcagcaatgaatcacaagaagtttcat |
30624069 |
T |
|
| Q |
101 |
ccaattcaacacaactagtacaatcatcatcacctaagaagtcatacaaaggagttagaagaagaccttggggaaaattcgcagcggaaataagagactc |
200 |
Q |
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| T |
30624068 |
ccaattcaacacaactagtacaatcatcatcacctaagaagtcatacaaaggagttagaagaagaccatggggaaaattcgcagcggaaataagagactc |
30623969 |
T |
|
| Q |
201 |
aacaagaaaaggtgttagagtt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
30623968 |
aacaagaaaaggtgttagagtt |
30623947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 30629795 - 30629578
Alignment:
| Q |
5 |
accaaaatgcacaaatattcaaagaatcatcaacctcttattccaattccagcacttcaaattctcaaatcagcaatgaatcacaagaagtttcatccaa |
104 |
Q |
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| T |
30629795 |
accaaaacacacaaatattcaaagagtcatcaacctccgattccaactcgaacacttcaaactctcaagtcagcacggagtcacaagaagtatcatccaa |
30629696 |
T |
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| Q |
105 |
ttcaacacaactagtacaatcatcatcacctaagaagtcatacaaaggagttagaagaagaccttggggaaaattcgcagcggaaataagagactcaaca |
204 |
Q |
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|||||| ||| | |||||||||||||||||||||| | |||| | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30629695 |
ttcaactcaattggtacaatcatcatcacctaagaggccatatagaggagttaggagaagaccatggggaaaattcgcagcggaaataagagactcaact |
30629596 |
T |
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| Q |
205 |
agaaaaggtgttagagtt |
222 |
Q |
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||||| |||||||||||| |
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| T |
30629595 |
agaaatggtgttagagtt |
30629578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 38862419 - 38862471
Alignment:
| Q |
169 |
tggggaaaattcgcagcggaaataagagactcaacaagaaaaggtgttagagt |
221 |
Q |
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||||||||||| || ||||| |||||||| ||||||||||||||||||||||| |
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| T |
38862419 |
tggggaaaatttgccgcggagataagagattcaacaagaaaaggtgttagagt |
38862471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 38830693 - 38830745
Alignment:
| Q |
164 |
gaccttggggaaaattcgcagcggaaataagagactcaacaagaaaaggtgtt |
216 |
Q |
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|||| ||||||||||||||||| || ||||| ||| |||||||||| |||||| |
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| T |
38830693 |
gaccgtggggaaaattcgcagcagagataagggacacaacaagaaatggtgtt |
38830745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 19720051 - 19719988
Alignment:
| Q |
158 |
gaagaagaccttggggaaaattcgcagcggaaataagagactcaacaagaaaaggtgttagagt |
221 |
Q |
| |
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||||||| || ||||| |||||||| ||||| ||||| ||||||||||||||||| | |||||| |
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| T |
19720051 |
gaagaaggccatgggggaaattcgcggcggagataagggactcaacaagaaaaggggctagagt |
19719988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 19840553 - 19840605
Alignment:
| Q |
169 |
tggggaaaattcgcagcggaaataagagactcaacaagaaaaggtgttagagt |
221 |
Q |
| |
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||||| |||||||| ||||| ||||| ||||||||||||||||| | |||||| |
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| T |
19840553 |
tgggggaaattcgcggcggagataagggactcaacaagaaaaggggctagagt |
19840605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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