View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2326_low_4 (Length: 502)
Name: NF2326_low_4
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_low_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 12 - 502
Target Start/End: Original strand, 6967712 - 6968202
Alignment:
| Q |
12 |
tcatcaagttcatgcactcattgagaaattctcagagaaattagccaacttttgttacccttttgttgaggttagattctttgagaacattggtgattat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6967712 |
tcatcaagttcatgcactcattgagaaattctcagagaaattagccaacttttgttacccttttgttgaggttagattctttgagaacattggtgattat |
6967811 |
T |
|
| Q |
112 |
atgagaaccaatgaagctttcttatacattgaaaactacttaacatctaaatcaaccaaccaagcaaagaaactccaaggtgaatatgtgagaaagtctt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6967812 |
atgagaaccaatgaagctttcttatacattgaaaactacttaacatctaaatcaaccaaccaagcaaagaaactccaaggtgaatatgtgagaaagtctt |
6967911 |
T |
|
| Q |
212 |
tagttctaaagatggatgaaagacaaaagttttatgatgagtttgaaggggttaagtttgtttggagtctaatcaagattgtccccaacacaaattctgt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6967912 |
tagttctaaagatggatgaaagacaaaagttttatgatgagtttgaaggggttaagtttgtttggagtctaatcaagattgtccccaacacaaattctgt |
6968011 |
T |
|
| Q |
312 |
ttcattctatccagcttcagacaaaagattctaccttctcacatttcatcgtagtcatcgcgatttcgttgagaaatcttaccttaaccatgttttggaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6968012 |
ttcattctatccagcttcagacaaaagattctaccttctcacatttcatcgtagtcatcgcgatttcgttgagaaatcttaccttaaccatgttttggaa |
6968111 |
T |
|
| Q |
412 |
caaggtaaagaaattggtctaagtaagaggcagagaaagctttacacaaattgcacaggtaatggtgaatatgaaaggggaggtaagtgga |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6968112 |
caaggtaaagaaattggtctaagtaagaggcagagaaagctttacacaaattgcacaggtaatggtgaatatgaaaggggaggtaagtgga |
6968202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University