View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2326_low_5 (Length: 471)

Name: NF2326_low_5
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2326_low_5
NF2326_low_5
[»] chr8 (17 HSPs)
chr8 (170-275)||(4599357-4599462)
chr8 (170-275)||(26758481-26758586)
chr8 (170-268)||(30591316-30591414)
chr8 (170-268)||(30887254-30887352)
chr8 (171-268)||(6575644-6575741)
chr8 (170-268)||(12391640-12391738)
chr8 (170-268)||(2378417-2378515)
chr8 (170-268)||(31960410-31960508)
chr8 (170-266)||(34852480-34852576)
chr8 (170-273)||(34740855-34740958)
chr8 (170-264)||(45264051-45264145)
chr8 (170-246)||(12505268-12505343)
chr8 (183-237)||(30021173-30021227)
chr8 (194-246)||(11929221-11929273)
chr8 (170-246)||(12110395-12110471)
chr8 (170-237)||(14123563-14123630)
chr8 (198-246)||(11941984-11942032)
[»] chr3 (18 HSPs)
chr3 (170-275)||(14902-15007)
chr3 (170-275)||(33047718-33047823)
chr3 (170-268)||(21913296-21913394)
chr3 (170-268)||(50902170-50902268)
chr3 (170-268)||(19286265-19286363)
chr3 (170-268)||(40997067-40997165)
chr3 (170-268)||(41950336-41950434)
chr3 (170-268)||(44926615-44926713)
chr3 (171-275)||(45692009-45692113)
chr3 (170-261)||(5409653-5409744)
chr3 (170-275)||(14600232-14600337)
chr3 (178-270)||(42168221-42168312)
chr3 (181-256)||(40317016-40317091)
chr3 (170-246)||(27263666-27263742)
chr3 (174-274)||(54768515-54768615)
chr3 (170-237)||(18364466-18364533)
chr3 (183-237)||(51390795-51390849)
chr3 (170-242)||(5963966-5964038)
[»] scaffold0024 (1 HSPs)
scaffold0024 (170-275)||(95341-95446)
[»] scaffold0365 (1 HSPs)
scaffold0365 (170-268)||(1082-1180)
[»] chr7 (18 HSPs)
chr7 (170-268)||(518274-518372)
chr7 (170-268)||(32812997-32813095)
chr7 (170-268)||(37468204-37468302)
chr7 (170-268)||(45296271-45296369)
chr7 (170-266)||(25676537-25676633)
chr7 (170-268)||(4582110-4582208)
chr7 (170-268)||(16730066-16730163)
chr7 (170-268)||(17707138-17707235)
chr7 (170-275)||(557648-557753)
chr7 (170-275)||(12848004-12848109)
chr7 (170-275)||(18927896-18928001)
chr7 (170-261)||(40459536-40459627)
chr7 (173-254)||(314434-314515)
chr7 (174-246)||(32359739-32359811)
chr7 (170-240)||(38188880-38188950)
chr7 (170-239)||(2791803-2791872)
chr7 (170-237)||(7792137-7792204)
chr7 (171-237)||(24006976-24007042)
[»] chr6 (10 HSPs)
chr6 (170-268)||(2523752-2523850)
chr6 (170-268)||(5064134-5064232)
chr6 (170-268)||(10838885-10838983)
chr6 (170-268)||(29919080-29919178)
chr6 (170-268)||(30592523-30592621)
chr6 (170-261)||(26047021-26047112)
chr6 (170-268)||(25087243-25087341)
chr6 (174-268)||(34783760-34783854)
chr6 (170-259)||(25510611-25510700)
chr6 (170-261)||(7807268-7807359)
[»] chr5 (15 HSPs)
chr5 (170-268)||(2851403-2851501)
chr5 (170-268)||(10642307-10642405)
chr5 (170-268)||(15295469-15295567)
chr5 (170-268)||(30984931-30985029)
chr5 (170-268)||(669515-669613)
chr5 (170-268)||(9616949-9617047)
chr5 (170-268)||(21119636-21119734)
chr5 (170-266)||(41307994-41308090)
chr5 (170-251)||(35858934-35859015)
chr5 (170-219)||(25104900-25104949)
chr5 (170-219)||(25163993-25164042)
chr5 (187-257)||(27132634-27132704)
chr5 (170-246)||(19265418-19265494)
chr5 (394-453)||(22830093-22830152)
chr5 (170-246)||(7711559-7711636)
[»] chr4 (18 HSPs)
chr4 (170-268)||(26496640-26496738)
chr4 (170-268)||(34150652-34150750)
chr4 (170-268)||(36668260-36668358)
chr4 (170-268)||(49318613-49318711)
chr4 (170-275)||(50179771-50179876)
chr4 (170-266)||(20254806-20254902)
chr4 (170-268)||(3151037-3151135)
chr4 (170-258)||(21232891-21232979)
chr4 (170-260)||(19433752-19433842)
chr4 (193-275)||(19441922-19442004)
chr4 (170-256)||(45851502-45851588)
chr4 (183-246)||(19184077-19184140)
chr4 (170-246)||(30548466-30548542)
chr4 (170-214)||(1757135-1757179)
chr4 (178-246)||(27551520-27551587)
chr4 (170-246)||(35234136-35234212)
chr4 (178-237)||(3075177-3075236)
chr4 (183-237)||(19914570-19914624)
[»] chr2 (16 HSPs)
chr2 (170-268)||(9302698-9302796)
chr2 (170-268)||(35466705-35466803)
chr2 (170-268)||(35860576-35860674)
chr2 (170-261)||(12391833-12391924)
chr2 (170-268)||(37426267-37426365)
chr2 (170-268)||(42453183-42453281)
chr2 (170-275)||(28137438-28137542)
chr2 (173-266)||(41759556-41759649)
chr2 (170-267)||(45326397-45326494)
chr2 (170-275)||(17153450-17153555)
chr2 (170-249)||(27247095-27247174)
chr2 (170-246)||(34041716-34041792)
chr2 (170-246)||(86086-86162)
chr2 (178-237)||(26275422-26275481)
chr2 (170-237)||(36213109-36213176)
chr2 (170-237)||(39271302-39271369)
[»] chr1 (8 HSPs)
chr1 (170-268)||(43055288-43055386)
chr1 (170-266)||(50579573-50579669)
chr1 (170-268)||(25699705-25699803)
chr1 (181-261)||(41445374-41445454)
chr1 (170-261)||(9398515-9398606)
chr1 (170-258)||(34305975-34306063)
chr1 (170-237)||(52869446-52869513)
chr1 (171-246)||(17306667-17306742)
[»] scaffold0608 (1 HSPs)
scaffold0608 (170-275)||(231-336)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 4599357 - 4599462
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4599357 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctccccttcccttct 4599456  T
Q  270 aaaaat 275  Q
    ||||||    
T  4599457 aaaaat 4599462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 26758586 - 26758481
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  26758586 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgcttccctcccctccccttct 26758487  T
Q  270 aaaaat 275  Q
    ||||||    
T  26758486 aaaaat 26758481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 30591414 - 30591316
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30591414 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 30591316  T

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Target: chr8; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 30887254 - 30887352
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30887254 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 30887352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 171 - 268
Target Start/End: Complemental strand, 6575741 - 6575644
Alignment:
Q  171 ttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6575741 ttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctccccttcccttc 6575644  T

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Target: chr8; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 12391640 - 12391738
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  12391640 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatgacaatgcaataaaattttaaagagatttgctcccctcccctccccttc 12391738  T

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Target: chr8; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 2378417 - 2378515
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | ||||||    
T  2378417 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccttcccttccccttc 2378515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 31960508 - 31960410
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  31960508 gttgttataaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaatttttaaagagatttgctcccctcccctccccttc 31960410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 34852576 - 34852480
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctaccct 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||| ||||    
T  34852576 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggctatgcaataaaattttaaagagatttactccccttccctcccct 34852480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 34740855 - 34740958
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    ||||||||||| ||||| |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  34740855 gttgttacaagattaatgttgagatttgaagttaatttaaggacaattatggcaatgcaataaaattttaaagagatttgctcccctcctctccccttct 34740954  T
Q  270 aaaa 273  Q
    ||||    
T  34740955 aaaa 34740958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 45264051 - 45264145
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacc 264  Q
    ||||||| || |||||||||||||||| ||||||||||||||||| ||||   ||||||||||||||||||| |||||| ||||||| |||||||    
T  45264051 gttgttataaagttaatattgagattttaaattaatttaaggataattataagaatgcaataaaattttaaatagattttctcccctaccctacc 45264145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 12505268 - 12505343
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    |||||||||||| |||||||||||||| || ||||| |||||||| || |  |||||||||||||||||||||||||    
T  12505268 gttgttacaaggataatattgagattttaa-ttaatctaaggataattttaacaatgcaataaaattttaaagagat 12505343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 30021227 - 30021173
Alignment:
Q  183 taatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    |||||||||||||| |||||||||||| |||| || ||||||||||||| |||||    
T  30021227 taatattgagattttaaattaatttaaagataattttggcaatgcaatacaattt 30021173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 11929273 - 11929221
Alignment:
Q  194 tttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    |||||||||||| ||| |||| || ||| ||||||||||||||||||||||||    
T  11929273 tttgaaattaatctaaagataattttggtaatgcaataaaattttaaagagat 11929221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 12110395 - 12110471
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    |||||||||||| ||| ||| |||||| ||||||||  ||| ||| || ||||||| |||||||| |||||||||||    
T  12110395 gttgttacaaggataacattaagattttaaattaatcgaagaataattttggcaattcaataaaaatttaaagagat 12110471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 14123630 - 14123563
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    ||||||| || | |||||||||||||| |||||| | |||||||| || ||||| |||||||||||||    
T  14123630 gttgttataaagataatattgagattttaaattattataaggataattttggcagtgcaataaaattt 14123563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 11941984 - 11942032
Alignment:
Q  198 aaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    |||||||| ||| |||| || ||| ||||||||||||||||||||||||    
T  11941984 aaattaatctaaagataattttggtaatgcaataaaattttaaagagat 11942032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 14902 - 15007
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14902 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctccccttcccttct 15001  T
Q  270 aaaaat 275  Q
    ||||||    
T  15002 aaaaat 15007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 33047823 - 33047718
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  33047823 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctccccttcccttcccttct 33047724  T
Q  270 aaaaat 275  Q
    ||||||    
T  33047723 aaaaat 33047718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 21913296 - 21913394
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21913296 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 21913394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 50902170 - 50902268
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50902170 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 50902268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 19286363 - 19286265
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19286363 gttgttacaagattaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 19286265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 40997165 - 40997067
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  40997165 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctccccttccctccccttc 40997067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 41950336 - 41950434
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  41950336 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccatcccctccccttc 41950434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 44926713 - 44926615
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44926713 gttgttataaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctccccttcccttc 44926615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 171 - 275
Target Start/End: Original strand, 45692009 - 45692113
Alignment:
Q  171 ttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttcta 270  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| |||| | ||||||    
T  45692009 ttgttacaaggttaatattgagatttgaaattaatttaaggataattatgacaatgcaataaaattttaaagagatttgatccccttcccttcgcttcta 45692108  T
Q  271 aaaat 275  Q
    |||||    
T  45692109 aaaat 45692113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 5409744 - 5409653
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  5409744 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaaatttaaagagatttgctcccttcccct 5409653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 14600337 - 14600232
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||||| ||||||||||| ||||||     
T  14600337 gttgttacaaagttaatattgagatttgaaattaatttaaggataattatgacaatgtaatgaaattttaaagagatttgttcccctcccctccccttca 14600238  T
Q  270 aaaaat 275  Q
    ||||||    
T  14600237 aaaaat 14600232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 42168312 - 42168221
Alignment:
Q  178 aaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttcta 270  Q
    |||||||||||||| |||| ||||||||||||||||| || |||||||||||||||||||||| ||||||||||  ||||||||||| |||||    
T  42168312 aaggttaatattgatattttaaattaatttaaggataattgtggcaatgcaataaaattttaacgagatttgct-tcctcccctacctttcta 42168221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 40317016 - 40317091
Alignment:
Q  181 gttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccct 256  Q
    ||||||||||| |||| ||| ||||||||||||| || |||||||||||||||||||||||||||||| |||||||    
T  40317016 gttaatattgaaattttaaaataatttaaggataattttggcaatgcaataaaattttaaagagatttcctcccct 40317091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 27263666 - 27263742
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    ||||||| |||| |||||||||||||| ||||| || |||| ||| || || ||||| |||||||||||||||||||    
T  27263666 gttgttataaggataatattgagattttaaattcatctaagaataattttgacaatgaaataaaattttaaagagat 27263742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 274
Target Start/End: Original strand, 54768515 - 54768615
Alignment:
Q  174 ttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttctaaaa 273  Q
    |||||||  |||||||||||||| |||||||| ||| |||| || ||| ||||||||||||||||| | |||| | |||  ||||||| |||||| ||||    
T  54768515 ttacaagaataatattgagattttaaattaatctaaagataattttggtaatgcaataaaattttataaagatcttctcttctcccctccccttcgaaaa 54768614  T
Q  274 a 274  Q
    |    
T  54768615 a 54768615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 18364533 - 18364466
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    ||||||| | || ||||||||| |||| |||||||| |||||||| || |||||||||||||||||||    
T  18364533 gttgttatacggataatattgaaattttaaattaatctaaggataattttggcaatgcaataaaattt 18364466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 51390795 - 51390849
Alignment:
Q  183 taatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    |||||||||||||| |||||||| |||| ||| || || ||||||||||||||||    
T  51390795 taatattgagattttaaattaatataagaataattttgacaatgcaataaaattt 51390849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 5963966 - 5964038
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaag 242  Q
    |||||||||| | ||||||| | |||| |||||||| |||  ||| || || |||||||||||||||||||||    
T  5963966 gttgttacaaagataatattaaaattttaaattaatctaaaaataattttgccaatgcaataaaattttaaag 5964038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 95341 - 95446
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  95341 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctccccttcccttcccttct 95440  T
Q  270 aaaaat 275  Q
    ||||||    
T  95441 aaaaat 95446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 1082 - 1180
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1082 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 1180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 518372 - 518274
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  518372 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 518274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 32813095 - 32812997
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32813095 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 32812997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 37468204 - 37468302
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37468204 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 37468302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 45296369 - 45296271
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45296369 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 45296271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 25676537 - 25676633
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctaccct 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  25676537 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgcttccctcccctcccct 25676633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 4582110 - 4582208
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  4582110 gttgttacaaggttaatattgagatttgaaattaatttaagtataattatgtcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 4582208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 16730163 - 16730066
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  16730163 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaat-aaattttaaagagatttgctcccctcccctccccttc 16730066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 17707235 - 17707138
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  17707235 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaat-aaattttaaagagatttgctcccctcccctccccttc 17707138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 557753 - 557648
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | | |||||||    
T  557753 gttgttacaaggttaatattgagatttggaattaatttaaggataattattgcaatgcaataaaattttaaagagatttgctcccctcacatccccttct 557654  T
Q  270 aaaaat 275  Q
    ||||||    
T  557653 aaaaat 557648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 12848004 - 12848109
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||| ||||||||||||||||| | |||||||    
T  12848004 gttgttacaaggttaatattgagatttgaaattaatttaaggatgattatgacaatgcaataaaattttaaacagatttgctcccctcccttccccttct 12848103  T
Q  270 aaaaat 275  Q
    ||||||    
T  12848104 aaaaat 12848109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 18927896 - 18928001
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||||||||| | ||||||||||||| ||||| |    
T  18927896 gttgttacaaggttaatatttaaatttgaaattaatttaaggataattatggcaatgcaataaatttttaaagagaatagctcccctccccttcccttat 18927995  T
Q  270 aaaaat 275  Q
    ||||||    
T  18927996 aaaaat 18928001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 40459627 - 40459536
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccct 261  Q
    ||||||| || |||||||||||||||| |||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| ||||    
T  40459627 gttgttataaagttaatattgagattttaaattaatttaaggataagtatgacaatgcaataaaattttaaagagatttgctccccttccct 40459536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 314434 - 314515
Alignment:
Q  173 gttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctccc 254  Q
    ||||||| || ||||||||||||| |||||||| |||||||| || | ||||||||||||||||||||||||| ||||||||    
T  314434 gttacaatgtcaatattgagatttaaaattaatctaaggataattttagcaatgcaataaaattttaaagagacttgctccc 314515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 32359811 - 32359739
Alignment:
Q  174 ttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    |||||| | |||||||||||||| |||||||| ||| |||| || ||||||||||||||||||||||||||||    
T  32359811 ttacaaagataatattgagattttaaattaatctaaagataattttggcaatgcaataaaattttaaagagat 32359739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 38188950 - 38188880
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaa 240  Q
    |||||||||||| |||||||||||||| |||||||  |||||||| || | ||||||||||||||||||||    
T  38188950 gttgttacaaggataatattgagattttaaattaacctaaggataatttttgcaatgcaataaaattttaa 38188880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 2791803 - 2791872
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaatttta 239  Q
    |||||||||||  |||| ||||||| | |||||||| |||||||| || || ||||||||||||||||||    
T  2791803 gttgttacaagaataatgttgagatattaaattaatctaaggataattttgacaatgcaataaaatttta 2791872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 7792204 - 7792137
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    ||||||| |||| |||||||||||||| ||||||||  |||||||  | ||||| |||||||||||||    
T  7792204 gttgttataaggataatattgagattttaaattaatccaaggatacgtttggcagtgcaataaaattt 7792137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 24007042 - 24006976
Alignment:
Q  171 ttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    ||||||||| | |||||||||||||| |||||||| |||| ||| || || |||| |||||||||||    
T  24007042 ttgttacaaagataatattgagattttaaattaatataagtataattttgacaatacaataaaattt 24006976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 2523850 - 2523752
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2523850 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 2523752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 5064134 - 5064232
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5064134 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 5064232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 10838983 - 10838885
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10838983 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 10838885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 29919080 - 29919178
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29919080 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 29919178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 30592621 - 30592523
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30592621 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 30592523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 26047021 - 26047112
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26047021 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccct 26047112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 25087243 - 25087341
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  25087243 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccttccccttc 25087341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 34783760 - 34783854
Alignment:
Q  174 ttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34783760 ttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 34783854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 25510611 - 25510700
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctccc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||| |||||||    
T  25510611 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatgataatgcaataaaattttaaagagatttgcttccctccc 25510700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 7807359 - 7807268
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccct 261  Q
    |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||    
T  7807359 gttgttacaaggttaatactgagatttaaaattaatttaaggataattatggcaaggcgataaaattttaaagagatttgctcccctcccct 7807268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 2851403 - 2851501
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2851403 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 2851501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 10642405 - 10642307
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10642405 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 10642307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 15295567 - 15295469
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15295567 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctccccttcccttc 15295469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 30985029 - 30984931
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30985029 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 30984931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 669613 - 669515
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  669613 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctctcctccccttcccttc 669515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 9616949 - 9617047
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9616949 gttgttacaagattaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 9617047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 21119636 - 21119734
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| | ||||||    
T  21119636 gttgttacaaggttaatattgagatttgaaattaatttaagtataattatgacaatgcaataaaattttaaagagatttgctcccctcccttccccttc 21119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 41308090 - 41307994
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctaccct 266  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||    
T  41308090 gttgttacaaggttaatattgagatttgaaattaatttaagtataattattgcaatgcaataaaattttaaagagatttgctccccttcccttccct 41307994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 170 - 251
Target Start/End: Original strand, 35858934 - 35859015
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgct 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  35858934 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagaaatttgct 35859015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 25104900 - 25104949
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25104900 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttat 25104949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 25163993 - 25164042
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25163993 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttat 25164042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 27132634 - 27132704
Alignment:
Q  187 attgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctc 257  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||    
T  27132634 attgagattttaaatcaatttaaggataattatggcaatgcaataaaattctaaagaaattttctcccctc 27132704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 19265418 - 19265494
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    |||||||||| | |||||||||||||| |||||| | |||||||| || | |||||||| |||||||||||||||||    
T  19265418 gttgttacaatgataatattgagattttaaattattctaaggataattttagcaatgcattaaaattttaaagagat 19265494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 394 - 453
Target Start/End: Original strand, 22830093 - 22830152
Alignment:
Q  394 cctataaacaaggtacatgacaaactcaaaatttgccactcaacaaaccatatgaagact 453  Q
    ||||||||  ||| ||| ||||||||| |||||| |||||||||||||||||||||||||    
T  22830093 cctataaatgaggcacaggacaaactctaaattttccactcaacaaaccatatgaagact 22830152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 7711559 - 7711636
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaa-attttaaagagat 246  Q
    ||||||||| || ||||||| |||||| |||| ||| |||||||| || || ||||||||||||  ||||||||||||    
T  7711559 gttgttacatggataatattaagatttaaaatcaatctaaggataattttgacaatgcaataaattttttaaagagat 7711636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 26496738 - 26496640
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26496738 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 26496640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 34150750 - 34150652
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34150750 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 34150652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 36668260 - 36668358
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36668260 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 36668358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 49318613 - 49318711
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49318613 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 49318711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 50179771 - 50179876
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  50179771 gttgttacaagtttaatattgagatttaaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctccccttccctccccttct 50179870  T
Q  270 aaaaat 275  Q
    ||||||    
T  50179871 aaaaat 50179876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 20254806 - 20254902
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctaccct 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  20254806 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctctcctcccctcccct 20254902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 3151037 - 3151135
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    |||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| || ||||||    
T  3151037 gttgttacaagactaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttactcccctcctctccccttc 3151135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 21232891 - 21232979
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcc 258  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||    
T  21232891 gttgttaaaaggttaatattgagatttgaaattaatttaagcataattataacaatgcaataaaattttaaagagatttgctcccctcc 21232979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 19433842 - 19433752
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccc 260  Q
    ||||||||||||||||| || |||||| |||||||||||| |||| ||||| |||| | |||||||||||||||||||||||||| |||||    
T  19433842 gttgttacaaggttaatgttaagatttaaaattaatttaaagataattatgacaattcgataaaattttaaagagatttgctcccatcccc 19433752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 19442004 - 19441922
Alignment:
Q  193 atttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttctaaaaat 275  Q
    |||| ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| || ||||| ||||    
T  19442004 attttaaattaatttaaggataattatgtcaatgcgataaaattttaaagagatttgctcccctcccctccctttctacaaat 19441922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 45851502 - 45851588
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccct 256  Q
    ||||||| || ||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||||| |  |||||||||    
T  45851502 gttgttataaagttaatattgaaatttaaaattaatttaaggataattattgcaatgcaataaaattttaaagaaaactgctcccct 45851588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 19184077 - 19184140
Alignment:
Q  183 taatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    |||||||||||||| ||||||||||||| ||| || ||||||||||||||||||| ||||||||    
T  19184077 taatattgagattttaaattaatttaagtataattttggcaatgcaataaaatttgaaagagat 19184140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 30548466 - 30548542
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    |||||||||||||| ||||||| |||| |||||||| ||  |||| || ||| ||||||||||||||||||||||||    
T  30548466 gttgttacaaggttcatattgaaattttaaattaatctatagataattttggtaatgcaataaaattttaaagagat 30548542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 1757179 - 1757135
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggata 214  Q
    |||||||||| | |||||||||||||| |||||||||||||||||    
T  1757179 gttgttacaaagataatattgagattttaaattaatttaaggata 1757135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 27551587 - 27551520
Alignment:
Q  178 aaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    |||| |||||||||||||| |||||||| |||||||| || | ||||||| ||||||| ||||||||||    
T  27551587 aaggataatattgagattttaaattaatctaaggataattttagcaatgc-ataaaatattaaagagat 27551520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 35234136 - 35234212
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    |||||||||| | |||||||||||||| |||||||| || ||||| || ||  | ||||||||||||| ||||||||    
T  35234136 gttgttacaaagataatattgagattttaaattaatctacggataattttgatagtgcaataaaatttgaaagagat 35234212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 3075236 - 3075177
Alignment:
Q  178 aaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    |||| |||||||||||||| |||||||| |||||||| || ||  |||||||||||||||    
T  3075236 aaggataatattgagattttaaattaatctaaggataattttgataatgcaataaaattt 3075177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 19914624 - 19914570
Alignment:
Q  183 taatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    |||||||||||||| ||||| || ||| |||| || |||||||||||||||||||    
T  19914624 taatattgagattttaaatttatctaaagataattttggcaatgcaataaaattt 19914570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 7e-44; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 9302796 - 9302698
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9302796 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 9302698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 35466803 - 35466705
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35466803 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 35466705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 35860576 - 35860674
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35860576 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 35860674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 12391833 - 12391924
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12391833 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccct 12391924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 37426267 - 37426365
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37426267 gttgttacaagtttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 37426365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 42453281 - 42453183
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42453281 gttgttacaaggttaatattgagatttgaaattaatttaaggataattacggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 42453183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 28137438 - 28137542
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||| ||||||||| || |||||||    
T  28137438 gttgttacaaggttaatattgagatttgaaattaatttaaggatgattatggcaatgcaataaaattttaaagaaatttactcccctcctct-cccttct 28137536  T
Q  270 aaaaat 275  Q
    ||||||    
T  28137537 aaaaat 28137542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 41759649 - 41759556
Alignment:
Q  173 gttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctaccct 266  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  41759649 gttacaaggttaatattgagatttgaaattaatttaaggttaattatggcaatgcaataaaattttaaagagatttgcttccctcccctcccct 41759556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 170 - 267
Target Start/End: Original strand, 45326397 - 45326494
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctaccctt 267  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| ||||||||| || |||||    
T  45326397 gttgttacaaggttaatattgagatttgaaattaatttaatgataattatggcaatgcaataaaattttaaagaaatttactcccctcctctcccctt 45326494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 170 - 275
Target Start/End: Complemental strand, 17153555 - 17153450
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    |||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||| ||||||||||| |||||||||||| || |||||| | |||||    
T  17153555 gttgttacaaggttgatattgagatttgaaattaatttaaagataattatggtaatgtaataaaattttgaagagatttgcttccatccccttctcttct 17153456  T
Q  270 aaaaat 275  Q
    ||||||    
T  17153455 aaaaat 17153450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 249
Target Start/End: Complemental strand, 27247174 - 27247095
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttg 249  Q
    ||||||||||||||||||||||||||| |||||||||||||||||  || ||||||||||||||||||||||||||||||    
T  27247174 gttgttacaaggttaatattgagattttaaattaatttaaggataagtagggcaatgcaataaaattttaaagagatttg 27247095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 34041716 - 34041792
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| || || |||||||||||||||||||||||||    
T  34041716 gttgttacaaggttaatattgagatttaaaaataatttaaggataattttgacaatgcaataaaattttaaagagat 34041792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 86162 - 86086
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    |||||||||| | |||||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||    
T  86162 gttgttacaaagataatattgagattttaaattaatttaaggataattttgtcaatgcaataaaattttaaagagat 86086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 26275422 - 26275481
Alignment:
Q  178 aaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    |||| |||||||||||||| ||||||||||||||||| || ||| | |||||||||||||    
T  26275422 aaggataatattgagattttaaattaatttaaggataattttggtagtgcaataaaattt 26275481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 36213176 - 36213109
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    ||||||| |||| |||||||||||||| ||||||||  ||||||| || ||||| |||||||||||||    
T  36213176 gttgttataaggataatattgagattttaaattaatccaaggataattttggcagtgcaataaaattt 36213109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 39271369 - 39271302
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    ||||||||| || |||||||||||||| |||||||| ||| |||| || || || |||||||||||||    
T  39271369 gttgttacatggataatattgagattttaaattaatctaaagataattttgacagtgcaataaaattt 39271302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 43055386 - 43055288
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43055386 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctccccttc 43055288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 50579669 - 50579573
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctaccct 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50579669 gttgttacaaggttaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctcccctcccctcccct 50579573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 25699803 - 25699705
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttc 268  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  25699803 gttgttacaaggtaaatattgagatttgaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctctcctcccctccccttc 25699705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 41445374 - 41445454
Alignment:
Q  181 gttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccct 261  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||    
T  41445374 gttaatattgagatttgaaattaatttaaggataattatgacaatgcaataaaattttaaagagatttgcttccctcccct 41445454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 9398515 - 9398606
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccct 261  Q
    |||||||||| |||||||||||||||| |||||||||||| |||| |||||| ||| ||||||||||||||||||| || ||||||||||||    
T  9398515 gttgttacaatgttaatattgagattttaaattaatttaaagataattatggtaatacaataaaattttaaagagactttctcccctcccct 9398606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 34306063 - 34305975
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcc 258  Q
    |||||||||| | |||||||||||||| || |||||||||  ||| || |  | ||||||||||||||||| ||||||| |||||||||    
T  34306063 gttgttacaacgataatattgagattttaatttaatttaaaaataattttttcgatgcaataaaattttaatgagattttctcccctcc 34305975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 52869446 - 52869513
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattt 237  Q
    ||||||| |||| |||||||||||||| |||||||| |||||||| || ||| | |||||||||||||    
T  52869446 gttgttataaggataatattgagattttaaattaatctaaggataattttggtagtgcaataaaattt 52869513  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 17306667 - 17306742
Alignment:
Q  171 ttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagat 246  Q
    ||||||||||| ||||| |||||||| ||||| || ||| |||| || ||| ||||||||||  ||||||||||||    
T  17306667 ttgttacaaggataatactgagattttaaattcatctaaagatacttttggtaatgcaataagtttttaaagagat 17306742  T

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Target: scaffold0608 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 170 - 275
Target Start/End: Original strand, 231 - 336
Alignment:
Q  170 gttgttacaaggttaatattgagatttgaaattaatttaaggatagttatggcaatgcaataaaattttaaagagatttgctcccctcccctacccttct 269  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  231 gttgttacaagtttaatattgagatttaaaattaatttaaggataattatggcaatgcaataaaattttaaagagatttgctccccttccctccccttct 330  T
Q  270 aaaaat 275  Q
    ||||||    
T  331 aaaaat 336  T

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