View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2326_low_6 (Length: 443)
Name: NF2326_low_6
Description: NF2326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2326_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 5809762 - 5809352
Alignment:
| Q |
19 |
atgcatattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5809762 |
atgcatattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactggatcgagaagctgatg |
5809663 |
T |
|
| Q |
119 |
accttgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagct |
218 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5809662 |
atcttgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaa-aacgcatttaaaaaagctggagtgaatgtggaagctttggaggagct |
5809564 |
T |
|
| Q |
219 |
tgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagattttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5809563 |
tgcgaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgtagaacttgccttatggtgccaccgaaaatgaacttgcaaagattttg |
5809464 |
T |
|
| Q |
319 |
gggaaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtctatgtatt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5809463 |
gggaaatttggtagtttggataaaataattctcgcctcgacaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtctatgtatt |
5809364 |
T |
|
| Q |
417 |
ttctttattttg |
428 |
Q |
| |
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|||||||||||| |
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| T |
5809363 |
ttctttattttg |
5809352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 418
Target Start/End: Complemental strand, 37755190 - 37754793
Alignment:
| Q |
23 |
atattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgacct |
122 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| || ||| |||||||||||| || |
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| T |
37755190 |
atattttaatcatgtgttgatgttaatagattgcagaaaacgcttctcggaaatatggtgttagtaaaagtgattttcttgatccagaagctgatgatct |
37755091 |
T |
|
| Q |
123 |
tgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcg |
222 |
Q |
| |
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|||| |||| | |||||| | |||| |||||||||| |||||||| || ||||||||||||||||||||||||||||| || |||||||||||| | |
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| T |
37755090 |
tgcttcacgtcattctctggcacaaactcaagtgatttttgaaacaaaaaatgcatttaaaaaagctggagtgaatgtggagtctctggaggagcttgtg |
37754991 |
T |
|
| Q |
223 |
aagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttggga |
322 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||| ||||||| || || ||||| |||||||| || |||||||||||||||||||| ||||||| |
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| T |
37754990 |
aattgtaaagttgatggcgtgaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcaaagatgtttggga |
37754891 |
T |
|
| Q |
323 |
aatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtc-tatgtatttt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||||||| | ||||||| |||| |||||||||| |
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|
| T |
37754890 |
aatttggtagtttggataaaataattctcccctcgacaaaaacattggccctggtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt |
37754793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 418
Target Start/End: Complemental strand, 37761164 - 37760767
Alignment:
| Q |
23 |
atattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgacct |
122 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||| || ||| |||||||||||| || |
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| T |
37761164 |
atattttaatcatgtgttgatgttaatagattgcagaaaacgcttctcggaaatatggtgttagtaaaagtgattttcttgatccagaagctgatgatct |
37761065 |
T |
|
| Q |
123 |
tgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcg |
222 |
Q |
| |
|
|||| |||| | |||||| | |||| |||||||||| |||||||| || ||||||||||||||||||||||||||||| || |||||||||||| | |
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|
| T |
37761064 |
tgcttcacgtcattctctggcacaaactcaagtgatttttgaaacaaaaaatgcatttaaaaaagctggagtgaatgtggagtctctggaggagcttgtg |
37760965 |
T |
|
| Q |
223 |
aagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttggga |
322 |
Q |
| |
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|| |||||||||||||| |||||||||||||||||||| ||||||| || || ||||| |||||||| || |||||||||||||||||||| ||||||| |
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| T |
37760964 |
aattgtaaagttgatggcgtgaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcaaagatgtttggga |
37760865 |
T |
|
| Q |
323 |
aatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcctctctccttcttttcatgacatgtc-tatgtatttt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||||||| | ||||||| |||| |||||||||| |
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|
| T |
37760864 |
aatttggtagtttggataaaataattctcccctcgacaaaaacattggccctggtatttttcc-ctctccttatgttcatgatgtgtcttatgtatttt |
37760767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 383
Target Start/End: Original strand, 38605513 - 38605875
Alignment:
| Q |
23 |
atattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgacct |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| || || |||||||||||| | |
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|
| T |
38605513 |
atattttaatcatgtgttgatgttaatagattacagaaaacgttactcggaaacatggtgttagtaaaagtgatttattgggtccagaagctgatgatgt |
38605612 |
T |
|
| Q |
123 |
tgctgtacgtattgctctgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgcg |
222 |
Q |
| |
|
||||| | | |||||||||||||||| | ||||||| ||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
38605613 |
tgctgcaaatgttgctctgggagaaactgatgtgattttagaaacaaaaaatgcatttaaaaaggctggagtgaatgtggagtctttggaggagcttgcg |
38605712 |
T |
|
| Q |
223 |
aagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttggga |
322 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||||||| ||||||| || || ||||| |||||||| || ||||||||||||||| |||| ||||||| |
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|
| T |
38605713 |
gagggtaaagtttatggcgttaaaagaagtaaccatgtacttttagcaaaaaatttgccatatggtgctacggaaaatgaacttgcagagatgtttggga |
38605812 |
T |
|
| Q |
323 |
aatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtatttttcc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |||||||||| |||||||||||| |
|
|
| T |
38605813 |
aatttggtagtttggataaaataattctcccctcgacaagaacattggccctggtatttttcc |
38605875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 23 - 379
Target Start/End: Complemental strand, 37739338 - 37738980
Alignment:
| Q |
23 |
atattttaatcacgtgttgatgttaatagattgtagaaaatgttgctcggaaatatggtgttagtaaaagtgatttactgaatcgagaagctgatgacct |
122 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| ||| ||| ||||||||||| || |
|
|
| T |
37739338 |
atattttaatcatgtgttgatgttaatagattgtagaaaacgctgctcggaaacatggtgttagtaaaagtgattttctggatccagaagctgatggtct |
37739239 |
T |
|
| Q |
123 |
tgctgtacg-tattgctctgggagaaacacaagtgatttcagaaacaaagaacgcatttaaaaaagctggagtgaatgtggaagctttggaggagcttgc |
221 |
Q |
| |
|
|||| ||| |||| |||||| |||||| | | |||| ||||||||| || ||||||| ||||||||||||||| ||||| || ||||||||| ||| |
|
|
| T |
37739238 |
tgcttcacggtatt-ctctggcagaaactgacgggattaaagaaacaaaaaatgcatttagaaaagctggagtgaacgtggagtctctggaggagcatgc |
37739140 |
T |
|
| Q |
222 |
gaagggtaaagttgatggcttgaaaagaagtaaccatgtaattttagcgaagaacttgccttatggtgccaccgaaaatgaacttgcaaagatttttggg |
321 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||||| |||||||| || |||||||| ||||||||||| |||||| |
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|
| T |
37739139 |
gaagggtaaagttgatggcaggaaaagaagtaaccatgtacttttagcgaaaaatttgccatatggtgctacggaaaatgatcttgcaaagatgtttggg |
37739040 |
T |
|
| Q |
322 |
aaatttggtagtttggataaaataattctcgcct--acaaaaacattggccttggtattt |
379 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
37739039 |
aaatttggtagtttggataaaataattctgccctcgacaaaaacattggccctggtattt |
37738980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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