View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2327_high_13 (Length: 397)
Name: NF2327_high_13
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2327_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 75 - 381
Target Start/End: Complemental strand, 36754137 - 36753832
Alignment:
| Q |
75 |
tagaaagtgagtgtggtagatgaaaaagacaccccaattcaccactaatttttgcagcaagttttgatgggaaaatccattttctctcctcttacttcta |
174 |
Q |
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| T |
36754137 |
tagaaagtgagtgtggtagatgaaaaagacaccccaattcaccactaatttttgcagcgggttttgatgggaaaatccattttctctcctcttacttcta |
36754038 |
T |
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| Q |
175 |
taattttcttatttagcataattgtgatgcccaaatggatgataaaaagaaatcatgaggtccaaatttgtggaaacgagtcataataactcatgctact |
274 |
Q |
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| T |
36754037 |
taattttcttattta-cataattgtgatgcccaaatggatgataaaaagaaatcatgaggtccaaatttgtggaaacgagtcataataactcatgctact |
36753939 |
T |
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| Q |
275 |
tgtaacaacaaatttgcaatgctttaaaactttgaaagagaatatgttgtcttttgtggtcttttgacaaacttaagttttgggacgacagaaagacatg |
374 |
Q |
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| T |
36753938 |
agtaacaacaaatttgcaatgctttaaaactttgaaagagaatatgttgtctcttgtggtcttttgacaaacttaagttttgggacgatagaaagacatg |
36753839 |
T |
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| Q |
375 |
tgatttc |
381 |
Q |
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| T |
36753838 |
tgatttc |
36753832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36754180 - 36754129
Alignment:
| Q |
1 |
aatctcgtgacatgagaatggatactagttatgtattatggcttagaaagtg |
52 |
Q |
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| T |
36754180 |
aatctcgtgacatgagaatggatactagttatgtattatggcttagaaagtg |
36754129 |
T |
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