View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2327_high_18 (Length: 315)
Name: NF2327_high_18
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2327_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 41343710 - 41343986
Alignment:
| Q |
22 |
gtgagctaaatttactagactaatcgttctctttctaaatagataaacattaaagaaaacaagatattacctatagtcccaaccacaatttgccatgtga |
121 |
Q |
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| T |
41343710 |
gtgagctaaatttactagactaatcattctctttctaaatagataaacattaaaggaaacaagatattacctatagttccaaccacaatttgccatgtga |
41343809 |
T |
|
| Q |
122 |
tttccacaggagccggatcaagtactgtggttacatcactcacagacacaacacctatccttgttcttctttttgttgttgttctagcattcttaacccc |
221 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41343810 |
tttcgacaggagccggatcaagtactgtggttacatcactcacagacacaacacctatccttgttcttctttttgttgttgttcttgcattcttaacccc |
41343909 |
T |
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| Q |
222 |
aaaatcacaggtttttctcactgttgaggaacaacaattatgtgtaactatgttcctagctttggcaatagttaaag |
298 |
Q |
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|||||| |||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||||| |
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| T |
41343910 |
aaaatcccaggtttttctcactgttaaggaacaacaatcacgtgtaactatgttcctagctttggtaatagttaaag |
41343986 |
T |
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