View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2327_high_20 (Length: 305)
Name: NF2327_high_20
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2327_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 70 - 275
Target Start/End: Original strand, 10396466 - 10396673
Alignment:
| Q |
70 |
gtttctctcgatttctacgttgggttttcatcttcatatcatccttttatatttccaatcgttattgagacctctttt-ataactgttcacgtaattaac |
168 |
Q |
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| T |
10396466 |
gtttctctttatttctacgttgtattttcatcttcatatcctccttttatattttcaatcgatattgagacctctttttataactgttcaagtaattaac |
10396565 |
T |
|
| Q |
169 |
ttagctagccatgcacttcctgcaatggtaattccaccctctcacctttgttgtgcttcat-gctctgatctttctcttgcttagatgaaacaatttcat |
267 |
Q |
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||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
10396566 |
ttagctaaccatgcacttcctgcgatggtacttccaccctctcacctttgttgtgcttcatcgctcttatctttctcttgcttagatgaaacaatttcat |
10396665 |
T |
|
| Q |
268 |
tctttata |
275 |
Q |
| |
|
|||||||| |
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|
| T |
10396666 |
tctttata |
10396673 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 10396393 - 10396438
Alignment:
| Q |
5 |
taaaagacacgacaaatattttcgtgctacacacacgaatgtggta |
50 |
Q |
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|||| ||||| |||||||||||||||||| | |||||||||||||| |
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| T |
10396393 |
taaatgacacaacaaatattttcgtgctaaagacacgaatgtggta |
10396438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 48069081 - 48069226
Alignment:
| Q |
5 |
taaaagacacgacaaatattttcgtgctacacacacgaatgtggtaacaacctccatatacaagggtttctctcgatttctacgttgggttttcatcttc |
104 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
48069081 |
taaaagacacgataaatattttcgtgctacacacacgaatgtggtaacaacctccatatacaagggtttctctctatttctatattgggttttcatcttc |
48069180 |
T |
|
| Q |
105 |
atatcatccttttatatttccaatcgttattgagacctcttttata |
150 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
48069181 |
atatcatccttttatattttcaatcgttattgagacctcttttata |
48069226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 149 - 285
Target Start/End: Original strand, 8913661 - 8913805
Alignment:
| Q |
149 |
taactgttcacgtaattaacttagctagccatgcacttcctgcaatggta---attccaccctctcacctttgttgtgcttcat-gctctga----tctt |
240 |
Q |
| |
|
|||| ||||| |||| ||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| | ||| |
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|
| T |
8913661 |
taacagttcaagtaaataagttagctagccatgcacttcctgcaatggtacatctttcaccctctcacctttgttgtgcttcatcactctaatctctctc |
8913760 |
T |
|
| Q |
241 |
tctcttgcttagatgaaacaatttcattctttatatgaccataaa |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8913761 |
tctcttgcttagatgaaacaatttcattctttatatgaccgtaaa |
8913805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 8913440 - 8913512
Alignment:
| Q |
70 |
gtttctctcgatttctacgttgggttttcatcttcatatcatccttttatatttccaatcgttattgagacct |
142 |
Q |
| |
|
||||||||| ||||| | |||| ||||| ||||||||||| ||||||||||||| || ||| ||||||||||| |
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|
| T |
8913440 |
gtttctctctatttcaatgttgtgtttttatcttcatatcctccttttatattttcagtcgatattgagacct |
8913512 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 38282780 - 38282863
Alignment:
| Q |
203 |
caccctctcacctttgttgtgcttcat-gctctgatctttctcttgcttagatgaaacaatttcattctttatatgaccataaatg |
287 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||| |||| |||||||||||||||||| ||||| || |||||||||||||||||| |
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|
| T |
38282780 |
caccctctcacctgttttgtgcttcattgctctaatct--ctcttgcttagatgaaacgatttctttttttatatgaccataaatg |
38282863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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