View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2327_high_25 (Length: 268)

Name: NF2327_high_25
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2327_high_25
NF2327_high_25
[»] chr5 (8 HSPs)
chr5 (61-250)||(33865633-33865822)
chr5 (63-115)||(33762650-33762702)
chr5 (61-140)||(33734160-33734239)
chr5 (61-115)||(33679694-33679748)
chr5 (61-115)||(33698411-33698465)
chr5 (61-131)||(33748641-33748711)
chr5 (62-163)||(33904232-33904333)
chr5 (61-131)||(33834761-33834831)
[»] scaffold0001 (1 HSPs)
scaffold0001 (62-132)||(148648-148718)
[»] scaffold0023 (1 HSPs)
scaffold0023 (62-142)||(114351-114431)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 61 - 250
Target Start/End: Complemental strand, 33865822 - 33865633
Alignment:
Q  61 ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataataattttgtgactccaatagtgacggtttc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||    
T  33865822 ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttgaatgggaaatataataattttgtgacaccaatagtaactgtttc 33865723  T
Q  161 aacaaatgatggtactggtgcaaaagatagtgaagtagatactattctaccaattaatgatgatggagattgtgctgcaaaaccatatct 250  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||||    
T  33865722 aacaaatgatggtaatgttgcaaaagatagtgaagtagatactattctaccaattaatggtgatggtgatagtgctgcacaaccatatct 33865633  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 33762702 - 33762650
Alignment:
Q  63 catgaagttattaaacctcaacctcgaactttttcatctcattcaccatggtt 115  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  33762702 catgaagttattaaacctcaacctcgaattttttcaactcattcaccatggtt 33762650  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 33734239 - 33734160
Alignment:
Q  61 ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataataattttgtg 140  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||| ||||||| ||| ||||| ||  ||||||||||    
T  33734239 ctcatgaagttattaaaccccaacctcgaattttttcaactcattcatcatggttgaataggaaacatgttaattttgtg 33734160  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 33679748 - 33679694
Alignment:
Q  61 ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggtt 115  Q
    ||||||||||||| || |||| |||||||||||||||| ||||||||| ||||||    
T  33679748 ctcatgaagttatcaagcctcgacctcgaactttttcaactcattcactatggtt 33679694  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 33698465 - 33698411
Alignment:
Q  61 ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggtt 115  Q
    ||||||||||||| || |||| |||||||||||||||| ||||||||| ||||||    
T  33698465 ctcatgaagttatcaagcctcgacctcgaactttttcaactcattcactatggtt 33698411  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 33748711 - 33748641
Alignment:
Q  61 ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataat 131  Q
    |||||||||||||||||||||  ||   |||||||||| |||||||||| ||||| ||||||||| |||||    
T  33748711 ctcatgaagttattaaacctcgtccattaactttttcaactcattcaccttggttgaatgggaaacataat 33748641  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 33904333 - 33904232
Alignment:
Q  62 tcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataataattttgtgactccaatagtgacggtttca 161  Q
    ||||||| ||||||||||| ||||||||||||| ||| ||||| |||| | ||| ||  ||||| |||||| |  |||||| ||||| ||| ||||||||    
T  33904333 tcatgaaattattaaacctaaacctcgaactttctcaactcatccaccttcgttgaactggaaacataatattaatgtgacaccaattgtggcggtttca 33904234  T
Q  162 ac 163  Q
    ||    
T  33904233 ac 33904232  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 33834831 - 33834761
Alignment:
Q  61 ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataat 131  Q
    ||||||||||||| |||||||  ||   |||||||||| |||||||||| ||||| ||||||||| |||||    
T  33834831 ctcatgaagttatcaaacctcgtccattaactttttcaactcattcaccttggttgaatgggaaacataat 33834761  T

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Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 148718 - 148648
Alignment:
Q  62 tcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataata 132  Q
    ||||||| |||||| |||||||||||||||||| ||| |||||||||| | ||| ||||||||| ||||||    
T  148718 tcatgaaattattagacctcaacctcgaactttctcaactcattcaccttcgttgaatgggaaacataata 148648  T

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Target: scaffold0023 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 114351 - 114431
Alignment:
Q  62 tcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataataattttgtgac 142  Q
    |||||| ||||||||||||||||||| |||||||||| || |||| || ||||| ||| ||||| ||  || |||||||||    
T  114351 tcatgatgttattaaacctcaacctcaaactttttcacctgattctccttggtttaataggaaacattgtagttttgtgac 114431  T

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