View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2327_high_28 (Length: 245)
Name: NF2327_high_28
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2327_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 38 - 221
Target Start/End: Complemental strand, 14341593 - 14341413
Alignment:
| Q |
38 |
tttttgaaataaaattctgacaaagtactttttgtgagattgaaggattttctactaattatataacaaagccattgagacccaattataattatgaggc |
137 |
Q |
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| T |
14341593 |
tttttgaaataaaattctgacaaagtactttttgtgagattgaaggattttctactaattatataacaaagccattgagacccaattat---tatgaggc |
14341497 |
T |
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| Q |
138 |
agggaataaattggcaaccagaaaaatatgttaataattgccggatatacattatttatggtaatccctttcatattaaataat |
221 |
Q |
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| T |
14341496 |
agggaataaattggcaaccagaaaaatatgttaataattgccggatatacattatttatggtaatccctttcatattaaataat |
14341413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 3602791 - 3602645
Alignment:
| Q |
38 |
tttttgaaataaaattctgacaaagtactttttgtgagattgaaggattttctactaattatataacaaagccattgagacccaattataattatgaggc |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3602791 |
tttttgaaataaaattctgacaaagtactttttgtgagattgaaggattttctactaattatataacaaagccattgagacccaatt---attatgaggc |
3602695 |
T |
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| Q |
138 |
agggaataaattggcaaccagaaaaatatgttaataattgccggatatac |
187 |
Q |
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| T |
3602694 |
agggagtaaattggcacccagaaaaatattttaataattgccggatatac |
3602645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 3602543 - 3602507
Alignment:
| Q |
185 |
tacattatttatggtaatccctttcatattaaataat |
221 |
Q |
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| T |
3602543 |
tacattatttatggtaatccctttcatattaaataat |
3602507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14341654 - 14341614
Alignment:
| Q |
1 |
attatagatttatattcttgagttatgtattgtattatttt |
41 |
Q |
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| T |
14341654 |
attatagatttatattcatgagttatgtattgtattatttt |
14341614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 3602848 - 3602810
Alignment:
| Q |
3 |
tatagatttatattcttgagttatgtattgtattatttt |
41 |
Q |
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| T |
3602848 |
tatagttttatattcttgagttatgtattgtattatttt |
3602810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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