View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2327_high_30 (Length: 239)
Name: NF2327_high_30
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2327_high_30 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 3390372 - 3390150
Alignment:
| Q |
17 |
atactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaattcacatgaaaataatccttgaaatatacaaagga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3390372 |
atactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaattcacatgaaaataatccttgaaatatacaaagga |
3390273 |
T |
|
| Q |
117 |
tatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3390272 |
tatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttg |
3390173 |
T |
|
| Q |
217 |
atctcccacaagtgattgaacat |
239 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
3390172 |
atctcccacaagtgattgaacat |
3390150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 3403655 - 3403433
Alignment:
| Q |
17 |
atactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaattcacatgaaaataatccttgaaatatacaaagga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3403655 |
atactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaattcacatgaaaataatccttgaaatatacaaagga |
3403556 |
T |
|
| Q |
117 |
tatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3403555 |
tatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttg |
3403456 |
T |
|
| Q |
217 |
atctcccacaagtgattgaacat |
239 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3403455 |
atctcccacaagtgattgaacat |
3403433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 3370026 - 3369808
Alignment:
| Q |
18 |
tactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaattcacatgaaaataatccttgaaatatacaaaggat |
117 |
Q |
| |
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|||||| ||||||||| |||||||||| || ||||||||||| |||||||| | |||||| || | |||||||||| ||||||||||||||||||||||| |
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| T |
3370026 |
tactttaagaaagatccacaaataaaccacatatttaacaaatcaatgactgatacatgtacactccacatgaaaacaatccttgaaatatacaaaggat |
3369927 |
T |
|
| Q |
118 |
atgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttga |
217 |
Q |
| |
|
|||| | |||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3369926 |
atgaggatatatcaaccctaattgatgtaggaggtggaaatggacaaagtctcaaagccattatatccaaatatccatcaataaaggcaatcaactttga |
3369827 |
T |
|
| Q |
218 |
tctcccacaagtgattgaa |
236 |
Q |
| |
|
|||||||||||||||||| |
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| T |
3369826 |
cctcccacaagtgattgaa |
3369808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 3360495 - 3360276
Alignment:
| Q |
17 |
atactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaattcacatgaaaataatccttgaaatatacaaagga |
116 |
Q |
| |
|
||||||| ||||||||| ||| ||||| | ||||||||||| ||||||| | ||||| ||| ||||||||||| |||||||||||||||| ||||| |
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|
| T |
3360495 |
atactttaagaaagatccacagataaatgaaatatttaacaaatcaatgacggatacatgcacaactcacatgaaaagaatccttgaaatataccaagga |
3360396 |
T |
|
| Q |
117 |
tatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttg |
216 |
Q |
| |
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| ||| |||||||||||||||||||||||||| ||||||| || ||| |||||||||||||||| || ||||| ||||||||||||||||||||||||| |
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| T |
3360395 |
tttgagggaatatcaacactggttgatgtaggtggtggaacagggcaaagtctcaaaatgattatctctaaatacccatcaataaaggcaatcaattttg |
3360296 |
T |
|
| Q |
217 |
atctcccacaagtgattgaa |
236 |
Q |
| |
|
| || |||||||| |||||| |
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|
| T |
3360295 |
accttccacaagtaattgaa |
3360276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 3299123 - 3298906
Alignment:
| Q |
18 |
tactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaattcacatgaaaataatccttgaaatatacaaaggat |
117 |
Q |
| |
|
||||||| |||||||| |||||||||| | |||||||||||| |||||||| | ||||| |||||||||||| ||||||||| ||||||||||||| |
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|
| T |
3299123 |
tactttgggaaagatccacaaataaaccagttatttaacaaatcaatgactgatacatgcaatgttcacatgaaaagaatccttgacatatacaaaggat |
3299024 |
T |
|
| Q |
118 |
atgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttga |
217 |
Q |
| |
|
||| || ||||||| ||||||||||||||||||| ||||||||| |||||| ||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
3299023 |
ttgagggggtatcaactttggttgatgtaggaggtggcaatggacaaactctcaagttgattattgccaaatacccatcaataaaggcaatcaattttga |
3298924 |
T |
|
| Q |
218 |
tctcccacaagtgattga |
235 |
Q |
| |
|
|| |||||||||||||| |
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| T |
3298923 |
ccttccacaagtgattga |
3298906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 3349304 - 3349086
Alignment:
| Q |
18 |
tactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaa--ttcacatgaaaataatccttgaaatatacaaagg |
115 |
Q |
| |
|
||||||| |||||||| |||||||||| | |||| |||||| |||||||| || ||| ||| ||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
3349304 |
tactttgggaaagatccacaaataaaccaaatattcaacaaatcaatgact--aatatgaccaaaattcacatgaaagaaattcttgaaaaatacaaagg |
3349207 |
T |
|
| Q |
116 |
atatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaatttt |
215 |
Q |
| |
|
||| || ||||||||||| |||||||| | |||||||||||||||||| ||||||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
3349206 |
atacgagggaatatcaactttggttgatattggaggtggaaatggacaaactctcaaaatgattattgaaaaatatccatcaattaagggaatcaatttt |
3349107 |
T |
|
| Q |
216 |
gatctcccacaagtgattgaa |
236 |
Q |
| |
|
|| || || |||||||||||| |
|
|
| T |
3349106 |
gaccttcctcaagtgattgaa |
3349086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 23993420 - 23993638
Alignment:
| Q |
18 |
tactttgagaaagatcaacaaataaacaacttatttaacaaagcaatgactcaaacatgtgcaattcacatgaaaataatccttgaaatatacaaaggat |
117 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||||||| |||||||| | ||||| || | || | || |||| ||||| ||||||||| |
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|
| T |
23993420 |
tactttggaaaagattcacaaataaacaaaatatttaacaaatcaatgactgatacatgcaatgttgagattagaaaaatcgttgaagaatacaaaggtc |
23993519 |
T |
|
| Q |
118 |
atgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttga |
217 |
Q |
| |
|
||| ||| ||||||| ||||||||||||||||||| | ||||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
23993520 |
ttgagggagtatcaactatggttgatgtaggaggtggcagtggacaaagtctcaaaactattattgccaaatatccatcaataaagggaatcaattttga |
23993619 |
T |
|
| Q |
218 |
tctcccacaagtgattgaa |
236 |
Q |
| |
|
||| || ||||| |||||| |
|
|
| T |
23993620 |
tcttcctcaagtcattgaa |
23993638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 20720475 - 20720379
Alignment:
| Q |
140 |
tgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttgatctcccacaagtgattgaa |
236 |
Q |
| |
|
|||||||||||| || || |||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
20720475 |
tgatgtaggaggaggcaacggacaaagtctctaaatgattattgccaaatacccatcaataaaggcaatcaattttgacctaccacaagtgattgaa |
20720379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 236
Target Start/End: Original strand, 43365078 - 43365227
Alignment:
| Q |
87 |
atgaaaataatccttgaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatcca |
186 |
Q |
| |
|
||||||| ||| ||||||||||||| |||| ||| |||||||||||| |||||||||| |||||||||| ||||| | ||| || |||| ||||||| |
|
|
| T |
43365078 |
atgaaaagaatgcttgaaatatacactggatttgagggaatatcaacattggttgatgttggaggtggaagtggacgaaatcttgaattgataatatcca |
43365177 |
T |
|
| Q |
187 |
aatatccatcaataaaggcaatcaattttgatctcccacaagtgattgaa |
236 |
Q |
| |
|
|||| |||| |||||||| ||| || |||||||| || ||||| |||||| |
|
|
| T |
43365178 |
aatacccattaataaagggaattaactttgatctgccccaagttattgaa |
43365227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 218
Target Start/End: Complemental strand, 6283185 - 6283069
Alignment:
| Q |
102 |
gaaatatacaaaggatatgaaggaatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataa |
201 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| | |||||||||| ||||| |||| ||| ||| || | || ||||| || || || ||||| || |||| |
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|
| T |
6283185 |
gaaaaatacaaaggatttgaaggaatatcaatattggttgatgttggaggaggaattgggcaaagtttgaatatgataatctctaagtatccttctataa |
6283086 |
T |
|
| Q |
202 |
aggcaatcaattttgat |
218 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
6283085 |
agggcattaattttgat |
6283069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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