View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2327_low_10 (Length: 465)

Name: NF2327_low_10
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2327_low_10
NF2327_low_10
[»] chr7 (10 HSPs)
chr7 (1-188)||(3701695-3701899)
chr7 (287-394)||(33670921-33671027)
chr7 (329-400)||(1469019-1469090)
chr7 (289-400)||(45554775-45554886)
chr7 (329-399)||(1468440-1468510)
chr7 (93-179)||(3681155-3681241)
chr7 (347-400)||(45551945-45551998)
chr7 (16-54)||(3678392-3678430)
chr7 (182-244)||(38811135-38811197)
chr7 (285-373)||(31238867-31238955)
[»] chr5 (11 HSPs)
chr5 (287-400)||(30575619-30575732)
chr5 (287-388)||(30574935-30575036)
chr5 (289-399)||(2358561-2358671)
chr5 (287-400)||(11571264-11571370)
chr5 (287-399)||(36258247-36258359)
chr5 (328-399)||(31930566-31930637)
chr5 (288-396)||(2359276-2359384)
chr5 (191-248)||(16924892-16924949)
chr5 (207-248)||(40383713-40383754)
chr5 (356-400)||(13208672-13208716)
chr5 (307-371)||(31659006-31659070)
[»] chr1 (9 HSPs)
chr1 (287-400)||(27789321-27789434)
chr1 (287-397)||(44289342-44289452)
chr1 (338-400)||(38194254-38194316)
chr1 (58-122)||(17683908-17683973)
chr1 (58-179)||(29915788-29915910)
chr1 (287-399)||(44289886-44289996)
chr1 (360-400)||(48578361-48578401)
chr1 (285-373)||(29406827-29406915)
chr1 (307-367)||(37403318-37403378)
[»] chr2 (9 HSPs)
chr2 (287-394)||(37912226-37912333)
chr2 (294-398)||(30517121-30517225)
chr2 (287-398)||(3322783-3322894)
chr2 (287-400)||(2046853-2046966)
chr2 (329-400)||(24399426-24399497)
chr2 (60-179)||(8385246-8385365)
chr2 (343-397)||(6204289-6204343)
chr2 (328-400)||(24398713-24398785)
chr2 (331-394)||(6208360-6208423)
[»] chr8 (8 HSPs)
chr8 (287-400)||(12296140-12296253)
chr8 (287-400)||(12300162-12300275)
chr8 (289-399)||(21347605-21347715)
chr8 (311-400)||(21348315-21348404)
chr8 (360-400)||(23183738-23183778)
chr8 (329-367)||(29091884-29091922)
chr8 (333-374)||(29091170-29091211)
chr8 (307-367)||(42756670-42756730)
[»] chr4 (7 HSPs)
chr4 (289-400)||(39819403-39819514)
chr4 (288-398)||(42559823-42559933)
chr4 (287-400)||(39820557-39820670)
chr4 (295-395)||(16434017-16434117)
chr4 (58-132)||(49354405-49354480)
chr4 (87-132)||(49344479-49344524)
chr4 (208-248)||(56027022-56027062)
[»] chr3 (9 HSPs)
chr3 (287-400)||(35651455-35651568)
chr3 (287-398)||(7726434-7726545)
chr3 (288-400)||(7725734-7725846)
chr3 (329-398)||(2779710-2779779)
chr3 (58-132)||(42205763-42205838)
chr3 (329-399)||(2780284-2780354)
chr3 (58-125)||(41798789-41798857)
chr3 (300-371)||(40935868-40935940)
chr3 (356-400)||(42153141-42153185)
[»] chr6 (5 HSPs)
chr6 (287-398)||(30322383-30322494)
chr6 (287-373)||(30322946-30323032)
chr6 (190-248)||(12323911-12323969)
chr6 (360-400)||(27902007-27902047)
chr6 (360-400)||(35117792-35117832)
[»] scaffold0027 (1 HSPs)
scaffold0027 (192-248)||(39985-40040)
[»] scaffold0499 (2 HSPs)
scaffold0499 (302-400)||(1082-1180)
scaffold0499 (328-400)||(1738-1810)
[»] scaffold0517 (1 HSPs)
scaffold0517 (307-367)||(4698-4758)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 3701899 - 3701695
Alignment:
Q  1 tgctaacttagactgttataaacacatttatattttggcacaaacaattataaacattaaa--------------cacaaatgtatacaaatag-tttca 85  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||              |||||||||||| ||||   |||||    
T  3701899 tgctaacttagactgttataaacacatttatattttggaacaaacaattataaacattaaataaatcaaaataaacacaaatgtatataaatgcatttca 3701800  T
Q  86 ctaattcttttgattcataaataaaattggtgtaaattagtaaagtgaacataaattaagatatattatactcaaatttacatatttgt--ccttttatt 183  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||  |||||||||    
T  3701799 ctaattcttttggttcataaataaagttggtgtaaattagtaaagtaaatgtaaattaagaaatattatactcaaatttacatatttgtccccttttatt 3701700  T
Q  184 ttatg 188  Q
    |||||    
T  3701699 ttatg 3701695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 287 - 394
Target Start/End: Original strand, 33670921 - 33671027
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| ||||||||| |||| |||    
T  33670921 gcacatgagtcatttaagtgatgttttaatctaatccattgcttttaatccggtggctgcaatttattctcaccattctca-ataagttactcattctca 33671019  T
Q  387 tgtgatat 394  Q
    ||||||||    
T  33671020 tgtgatat 33671027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 1469019 - 1469090
Alignment:
Q  329 ttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatatgccccc 400  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||||  |||| |||||||||||||||||    
T  1469019 ttttaatccgatagctgcaatttattctcaccattctcacataagttagtcattctcatgtgatatgccccc 1469090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 45554775 - 45554886
Alignment:
Q  289 acatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatg 388  Q
    ||||| |||| ||||||| || |||||||| | |||||  |||||||| || | ||| |||||||| ||||||||||| |||||| ||| |||| |||||    
T  45554775 acatgagtcatttaagtgatgctttaatctcacccattatttttaatctgacggctgtaatttattctcaccattctcgcataagatacccattctcatg 45554874  T
Q  389 tgatatgccccc 400  Q
    ||||||||||||    
T  45554875 tgatatgccccc 45554886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 1468510 - 1468440
Alignment:
Q  329 ttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatatgcccc 399  Q
    |||||||| ||||  || |||||||| |||||||||||||||||||||  |||| ||||||||||||||||    
T  1468510 ttttaatctgatggttgtaatttattctcaccattctcacataagttaaccattctcatgtgatatgcccc 1468440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 179
Target Start/End: Complemental strand, 3681241 - 3681155
Alignment:
Q  93 ttttgattcataaataaaattggtgtaaattagtaaagtgaacataaattaagatatattatactcaaatttacatatttgtccttt 179  Q
    ||||| || |||||||||||||||||||||||| |||||     |||||||||| | ||||||| ||||||||| ||||||||||||    
T  3681241 ttttggtttataaataaaattggtgtaaattagcaaagttggtgtaaattaagaaacattatacacaaatttacgtatttgtccttt 3681155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 45551998 - 45551945
Alignment:
Q  347 aatttattttcaccattctcacataagttacacattttcatgtgatatgccccc 400  Q
    |||||||| |||||||||||||||||| ||| |||| |||| ||||||||||||    
T  45551998 aatttattctcaccattctcacataagatactcattctcatttgatatgccccc 45551945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 3678430 - 3678392
Alignment:
Q  16 ttataaacacatttatattttggcacaaacaattataaa 54  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  3678430 ttataaacacatttatattttggaataaacaattataaa 3678392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 38811135 - 38811197
Alignment:
Q  182 ttttatgcccaaataaaaatatgcgcacttgataacttagaccttaatgtttttatgttggtc 244  Q
    ||||||| ||||||||||||  || |||||| ||||||| || ||||||||||||| ||||||    
T  38811135 ttttatgtccaaataaaaatgcgcacacttgttaacttatacgttaatgtttttatattggtc 38811197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 373
Target Start/End: Original strand, 31238867 - 31238955
Alignment:
Q  285 tagcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataag 373  Q
    |||||||||  ||||||||||| ||||||||||| |||| ||  |||||||| ||||  || |||| ||| ||| |||||||| |||||    
T  31238867 tagcacatgactcacttaagtgatgttttaatctcatccctttattttaatctgatggttgtaattcattctcatcattctcatataag 31238955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 287 - 400
Target Start/End: Original strand, 30575619 - 30575732
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  30575619 gcacatgggtcacttaagtggtgttttaatttaatctattgcttttaatccgatggctgcaatttattctcatcattctcacataagttacacattttca 30575718  T
Q  387 tgtgatatgccccc 400  Q
    ||||||||| ||||    
T  30575719 tgtgatatgtcccc 30575732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 287 - 388
Target Start/End: Complemental strand, 30575036 - 30574935
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| |||    
T  30575036 gcacatgagtcacttaagtgatgttttaatctaatccattgcttctaatccgatgactgcaatttattctcaccattctcacataagttactcattctca 30574937  T
Q  387 tg 388  Q
    ||    
T  30574936 tg 30574935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 289 - 399
Target Start/End: Complemental strand, 2358671 - 2358561
Alignment:
Q  289 acatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatg 388  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||  || |||||||| ||| |||||||||||||| ||  |||| |||||    
T  2358671 acatgagtcacttaagtgttgttttaatctcatccattgcttttaatctgatgggtgtaatttattctcatcattctcacataagatatccattctcatg 2358572  T
Q  389 tgatatgcccc 399  Q
    |||||||||||    
T  2358571 tgatatgcccc 2358561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 287 - 400
Target Start/End: Complemental strand, 11571370 - 11571264
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||||||||||| ||||||||||| || ||||||||||||||||       ||||||||| |||||||||||||||||||||  |||| |||    
T  11571370 gcacatgagtcacttaagtgatgttttaatctcattcattgcttttaatccg-------caatttattctcaccattctcacataagttagtcattctca 11571278  T
Q  387 tgtgatatgccccc 400  Q
    ||||||||||||||    
T  11571277 tgtgatatgccccc 11571264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 399
Target Start/End: Complemental strand, 36258359 - 36258247
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||||||||||| | ||||||||| | ||||| ||||||||| || |  || |||||||| |||||||||||||||||| ||| |||| |||    
T  36258359 gcacatgagtcacttaagtgatattttaatcttacccattacttttaatctgacggttgtaatttattctcaccattctcacataagatactcattctca 36258260  T
Q  387 tgtgatatgcccc 399  Q
    |||||||||||||    
T  36258259 tgtgatatgcccc 36258247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 399
Target Start/End: Complemental strand, 31930637 - 31930566
Alignment:
Q  328 cttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatatgcccc 399  Q
    ||||||||| |||| |||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||    
T  31930637 cttttaatctgatggctgcaatttattctcaccattctcacataagatactcattctcatgtgatatgcccc 31930566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 396
Target Start/End: Original strand, 2359276 - 2359384
Alignment:
Q  288 cacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcat 387  Q
    |||||| || ||||||||| ||||||||||| | ||||| ||||||||| || |  || |||||||| |||||||||||||||||| ||| |||| ||||    
T  2359276 cacatgagttacttaagtgatgttttaatctgacccattacttttaatctgacgggtgtaatttattctcaccattctcacataagatacccattctcat 2359375  T
Q  388 gtgatatgc 396  Q
     ||||||||    
T  2359376 atgatatgc 2359384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 16924892 - 16924949
Alignment:
Q  191 caaataaaaatatgcgcacttgataacttagaccttaatgtttttatgttggtctaag 248  Q
    ||||| ||||||| ||| |||| ||||||||||||| ||||||||| |||||||||||    
T  16924892 caaatgaaaatatacgcccttgctaacttagacctttatgtttttaggttggtctaag 16924949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 40383754 - 40383713
Alignment:
Q  207 cacttgataacttagaccttaatgtttttatgttggtctaag 248  Q
    |||||| |||||||| |||||||||||||| |||||||||||    
T  40383754 cacttgctaacttagtccttaatgtttttaggttggtctaag 40383713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 13208716 - 13208672
Alignment:
Q  356 tcaccattctcacataagttacacattttcatgtgatatgccccc 400  Q
    ||||||||||||||||||||   |||| |||||||||||||||||    
T  13208716 tcaccattctcacataagttgtccattctcatgtgatatgccccc 13208672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 31659006 - 31659070
Alignment:
Q  307 gtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacata 371  Q
    |||||||||||| |||  ||| ||||||||  ||||||  |||||||| ||||||||||||||||    
T  31659006 gtgttttaatctcatcgcttgattttaatctaatgactataatttattctcaccattctcacata 31659070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 287 - 400
Target Start/End: Original strand, 27789321 - 27789434
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| |||| |||    
T  27789321 gcacatgagtcacttaagtgatgttttaatctaatccattgtttttaatccgatggctgcaatttattctcaccattctcacataagttactcattctca 27789420  T
Q  387 tgtgatatgccccc 400  Q
    ||||||||||||||    
T  27789421 tgtgatatgccccc 27789434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 287 - 397
Target Start/End: Complemental strand, 44289452 - 44289342
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||||||||||| ||||||||||| | |||||  |||||||| || | ||| |||||||| ||| |||||||||||||| ||| |||| |||    
T  44289452 gcacatgagtcacttaagtgatgttttaatctcacccattatttttaatctgacggctgtaatttattctcatcattctcacataagatacccattctca 44289353  T
Q  387 tgtgatatgcc 397  Q
    |||||||||||    
T  44289352 tgtgatatgcc 44289342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 400
Target Start/End: Complemental strand, 38194316 - 38194254
Alignment:
Q  338 gatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatatgccccc 400  Q
    ||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||    
T  38194316 gatgactgcaatttattctcaccattctcatataagatactcattttcatgtgatatgccccc 38194254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 17683973 - 17683908
Alignment:
Q  58 taaacacaaatgtatacaaata-gtttcactaattcttttgattcataaataaaattggtgtaaat 122  Q
    |||||||||||||||||||||| |||||| |||||| ||||||||||||||||| |||||||||||    
T  17683973 taaacacaaatgtatacaaatatgtttcattaattcatttgattcataaataaagttggtgtaaat 17683908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 179
Target Start/End: Complemental strand, 29915910 - 29915788
Alignment:
Q  58 taaacacaaatgtatacaaatag-tttcactaattcttttgattcataaataaaattggtgtaaattagtaaagtgaacataaattaagatatattatac 156  Q
    |||||||||||| |||||||||  ||||| ||||||||||| |||||||||||||| | |||||||| | ||||||    |||||||||| |  |||||     
T  29915910 taaacacaaatgcatacaaatatatttcattaattcttttggttcataaataaaatcgatgtaaattggaaaagtgggtgtaaattaagacacgttatat 29915811  T
Q  157 tcaaatttacatatttgtccttt 179  Q
    ||||||||||| |||| ||||||    
T  29915810 tcaaatttacacatttatccttt 29915788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 399
Target Start/End: Original strand, 44289886 - 44289996
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||||||||||| ||||||||||| | |||||  |||||| || | | ||| |||||||| ||| |||| ||||||||| ||| |||| |||    
T  44289886 gcacatgagtcacttaagtgatgttttaatctcacccattatttttaa-cctacggctgtaatttattctcatcatt-tcacataagatactcattctca 44289983  T
Q  387 tgtgatatgcccc 399  Q
    |||| ||||||||    
T  44289984 tgtggtatgcccc 44289996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 48578361 - 48578401
Alignment:
Q  360 cattctcacataagttacacattttcatgtgatatgccccc 400  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  48578361 cattctcacataagttactcattctcatgtgatatgccccc 48578401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 373
Target Start/End: Complemental strand, 29406915 - 29406827
Alignment:
Q  285 tagcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataag 373  Q
    |||||||||  ||| ||||||| ||||||||||| |||| ||  |||||||| |||| ||| |||| ||| ||| |||||||| |||||    
T  29406915 tagcacatgactcatttaagtgatgttttaatctcatccctttattttaatctgatggctgtaattcattctcatcattctcatataag 29406827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 37403378 - 37403318
Alignment:
Q  307 gtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctca 367  Q
    |||||||||||| |||| ||||||||||||  ||| || ||||| ||| ||||||||||||    
T  37403378 gtgttttaatcttatcccttgcttttaatctaatggctacaattcattctcaccattctca 37403318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 287 - 394
Target Start/End: Original strand, 37912226 - 37912333
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||    
T  37912226 gcacatgagtcatttaagtgatgttttaatctaatccattgcttttaatccgatgactacaatttattctcaccattctcacataagttacacattctca 37912325  T
Q  387 tgtgatat 394  Q
    ||||||||    
T  37912326 tgtgatat 37912333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 294 - 398
Target Start/End: Complemental strand, 30517225 - 30517121
Alignment:
Q  294 ggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgata 393  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||| |||| |||| ||||||||||    
T  30517225 ggtcacttaagtggtgttttaatctaatccattacttttaatccgatggctgcaatttattctcatcattctcacataaattactcattctcatgtgata 30517126  T
Q  394 tgccc 398  Q
    |||||    
T  30517125 tgccc 30517121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 398
Target Start/End: Original strand, 3322783 - 3322894
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||||||||||||||||||||||| || ||||| ||||||||  ||||||| || |||||||||||||||||||||||||||  |||| ||     
T  3322783 gcacatgagtcacttaagtggtgttttaatctcattcattgtttttaatctaatgactggaaattattttcaccattctcacataagttaaccattctcg 3322882  T
Q  387 tgtgatatgccc 398  Q
    ||| ||||||||    
T  3322883 tgtaatatgccc 3322894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 400
Target Start/End: Original strand, 2046853 - 2046966
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||||||||||| ||||||||||| | ||||||||||||||| || |  || |||||||| ||| |||| ||||||||| ||| |||| | |    
T  2046853 gcacatgagtcacttaagtgttgttttaatctcacccattgcttttaatctgacgggtgtaatttattctcatcattttcacataagatacccattctta 2046952  T
Q  387 tgtgatatgccccc 400  Q
    ||||||||||||||    
T  2046953 tgtgatatgccccc 2046966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 24399426 - 24399497
Alignment:
Q  329 ttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatatgccccc 400  Q
    ||||||||||||| ||| |||| ||| | |||||||||||||||||||| |||| |||||||||||||||||    
T  24399426 ttttaatccgatggctgtaattcattcttaccattctcacataagttactcattctcatgtgatatgccccc 24399497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 179
Target Start/End: Complemental strand, 8385365 - 8385246
Alignment:
Q  60 aacacaaatgtatacaaata-gtttcactaattcttttgattcataaataaaattggtgtaaattagtaaagtgaacataaattaagatatattatactc 158  Q
    ||||||||||| |||||||| |||||| ||||||  | | |||||||||||| |||||| ||||||| ||| ||| |||||||| ||| | |||| | ||    
T  8385365 aacacaaatgtctacaaatatgtttcattaattcgatgg-ttcataaataaatttggtgaaaattagcaaaatgagcataaattcagaaacattacattc 8385267  T
Q  159 aaatttacatatttgtccttt 179  Q
    |||||||||||||| ||||||    
T  8385266 aaatttacatatttatccttt 8385246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 6204343 - 6204289
Alignment:
Q  343 ctgcaatttattttcaccattctcacataagttacacattttcatgtgatatgcc 397  Q
    |||||||| ||| |||||||||||||||||| ||| |||| ||||||||||||||    
T  6204343 ctgcaattcattctcaccattctcacataagatactcattctcatgtgatatgcc 6204289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 400
Target Start/End: Complemental strand, 24398785 - 24398713
Alignment:
Q  328 cttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatatgccccc 400  Q
    ||||||||| ||||  || |||| ||| | |||||||||||||||||||| |||| |||| ||||||||||||    
T  24398785 cttttaatctgatggttgtaattcattcttaccattctcacataagttactcattctcatatgatatgccccc 24398713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 6208423 - 6208360
Alignment:
Q  331 ttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatat 394  Q
    |||||| ||||  ||||||| ||| |||||||||||||||||| ||| |||| |||||||||||    
T  6208423 ttaatctgatggttgcaattcattctcaccattctcacataagatacccattctcatgtgatat 6208360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 287 - 400
Target Start/End: Complemental strand, 12296253 - 12296140
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||||||||||  |||| |||    
T  12296253 gcacatgagtcacttaagtggtgttttaatctcattcattgcttttaatccgatggctgcaatttattctcaccattctcacataagttagccattctca 12296154  T
Q  387 tgtgatatgccccc 400  Q
    ||||||||||||||    
T  12296153 tgtgatatgccccc 12296140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 287 - 400
Target Start/End: Original strand, 12300162 - 12300275
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| || | ||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||||||||||||||||||  |||| |||    
T  12300162 gcacatgagtaatttaagtggtgttttaatctcattcattgcttttaatccgatggctgcaatttattctcaccattctcacataagttagccattctca 12300261  T
Q  387 tgtgatatgccccc 400  Q
    ||||||||||||||    
T  12300262 tgtgatatgccccc 12300275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 399
Target Start/End: Complemental strand, 21347715 - 21347605
Alignment:
Q  289 acatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatg 388  Q
    ||||| |||| ||||||| || |||||||| | |||||  |||||||| || | ||| |||||||| |||||||||||||||||| |||  ||| |||||    
T  21347715 acatgagtcatttaagtgatgctttaatctcacccattatttttaatctgacggctgtaatttattctcaccattctcacataagatacctattctcatg 21347616  T
Q  389 tgatatgcccc 399  Q
    |||||||||||    
T  21347615 tgatatgcccc 21347605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 21348315 - 21348404
Alignment:
Q  311 tttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatatgccccc 400  Q
    |||||||| | |||||  |||||||| || | ||| |||||||| |||||||||||||||||| ||| |||| |||||||||||||||||    
T  21348315 tttaatctcacccattatttttaatctgacggctgtaatttattctcaccattctcacataagatacccattctcatgtgatatgccccc 21348404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 23183778 - 23183738
Alignment:
Q  360 cattctcacataagttacacattttcatgtgatatgccccc 400  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  23183778 cattctcacataagttacccattctcatgtgatatgccccc 23183738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 29091884 - 29091922
Alignment:
Q  329 ttttaatccgatgactgcaatttattttcaccattctca 367  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  29091884 ttttaatccgatggctgcaatttattctcaccattctca 29091922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 29091211 - 29091170
Alignment:
Q  333 aatccgatgactgcaatttattttcaccattctcacataagt 374  Q
    |||| |||| |||||||||||| |||||||||||||||||||    
T  29091211 aatctgatggctgcaatttattctcaccattctcacataagt 29091170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 42756730 - 42756670
Alignment:
Q  307 gtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctca 367  Q
    |||||||||||| |||| ||  ||||||||  ||| |||||||||||| ||||||||||||    
T  42756730 gtgttttaatcttatcccttaattttaatctaatggctgcaatttattctcaccattctca 42756670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 39819514 - 39819403
Alignment:
Q  289 acatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatg 388  Q
    ||||| ||||||||||| |||||||||||| || ||||||||||||||||||  |||||||||||| |||||||||||| ||||||||  |||| |||||    
T  39819514 acatgagtcacttaagtagtgttttaatctcattcattgcttttaatccgattgctgcaatttattctcaccattctcatataagttagtcattctcatg 39819415  T
Q  389 tgatatgccccc 400  Q
    ||||||||||||    
T  39819414 tgatatgccccc 39819403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 42559933 - 42559823
Alignment:
Q  288 cacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcat 387  Q
    |||||| || ||||||||||||||||||||| | | |||||||||||||||| | |||||||||||| | |||||||||||||||||||  |||| ||||    
T  42559933 cacatgagtgacttaagtggtgttttaatctcacctattgcttttaatccgacggctgcaatttattcttaccattctcacataagttagtcattctcat 42559834  T
Q  388 gtgatatgccc 398  Q
    |||||||||||    
T  42559833 gtgatatgccc 42559823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 400
Target Start/End: Original strand, 39820557 - 39820670
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||||||||||||||||||||||| || ||||| |||||||| |||| ||  |||||||| |||||||||||||||||||||  |||| |||    
T  39820557 gcacatgagtcacttaagtggtgttttaatctcattcattgtttttaatctgatggctaaaatttattctcaccattctcacataagttagtcattctca 39820656  T
Q  387 tgtgatatgccccc 400  Q
    ||| ||||||||||    
T  39820657 tgtaatatgccccc 39820670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 16434117 - 16434017
Alignment:
Q  295 gtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatat 394  Q
    |||||||||||||||||||||||| |   ||| ||||||||| ||||||||||||||||| | |||||||||||||||||||  |||| |||||||||||    
T  16434117 gtcacttaagtggtgttttaatctcacttattacttttaatctgatgactgcaatttattctgaccattctcacataagttaaccattctcatgtgatat 16434018  T
Q  395 g 395  Q
    |    
T  16434017 g 16434017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 49354480 - 49354405
Alignment:
Q  58 taaacacaaatgtatacaaata-gtttcactaattcttttgattcataaataaaattggtgtaaattagtaaagtg 132  Q
    |||||||||||||||| ||||| |||||  ||||||||||| |||||||||||| ||| |||||||||| ||||||    
T  49354480 taaacacaaatgtatataaatatgtttcgataattcttttgcttcataaataaagttgttgtaaattagcaaagtg 49354405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 49344524 - 49344479
Alignment:
Q  87 taattcttttgattcataaataaaattggtgtaaattagtaaagtg 132  Q
    ||||||||||| |||||||||||| ||| |||||||||| ||||||    
T  49344524 taattcttttggttcataaataaagttgttgtaaattagcaaagtg 49344479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 56027022 - 56027062
Alignment:
Q  208 acttgataacttagaccttaatgtttttatgttggtctaag 248  Q
    ||||| |||||||||||||||| ||||||||||||| ||||    
T  56027022 acttgctaacttagaccttaatatttttatgttggtataag 56027062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 287 - 400
Target Start/End: Complemental strand, 35651568 - 35651455
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||| | | |||||||| | |||||||||| ||||| ||| ||||||||    
T  35651568 gcacatgagtcatttaagtggtgttttaatctcatccattgcttttaatctgatggcagtaatttattcttaccattctcatataagatacccattttca 35651469  T
Q  387 tgtgatatgccccc 400  Q
    | ||||||||||||    
T  35651468 tttgatatgccccc 35651455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 398
Target Start/End: Original strand, 7726434 - 7726545
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| |||||||||||| ||||||||||| | ||||||||||||||| || |  || |||||||| |||||||||||||||||| ||| |||| |||    
T  7726434 gcacatgagtcacttaagtgttgttttaatctcacccattgcttttaatctgacgggtgtaatttattctcaccattctcacataagatacccattctca 7726533  T
Q  387 tgtgatatgccc 398  Q
    ||||||||||||    
T  7726534 tgtgatatgccc 7726545  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 288 - 400
Target Start/End: Complemental strand, 7725846 - 7725734
Alignment:
Q  288 cacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcat 387  Q
    |||||| || ||||||||| ||||||||||| | ||||||||||||||| || |  || |||||||| |||||||||||||||||| ||| |||| ||||    
T  7725846 cacatgagttacttaagtgatgttttaatctgacccattgcttttaatctgacgggtgtaatttattctcaccattctcacataagatacccattatcat 7725747  T
Q  388 gtgatatgccccc 400  Q
    |||||||||||||    
T  7725746 gtgatatgccccc 7725734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 329 - 398
Target Start/End: Complemental strand, 2779779 - 2779710
Alignment:
Q  329 ttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatatgccc 398  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||||  |||| |||||||||||||||    
T  2779779 ttttaatccgatagctgcaatttattctcaccattctcacataagttagtcattctcatgtgatatgccc 2779710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 42205763 - 42205838
Alignment:
Q  58 taaacacaaatgtatacaaata-gtttcactaattcttttgattcataaataaaattggtgtaaattagtaaagtg 132  Q
    |||||||||||||||||||||| |||||| ||| ||||||| |||||||||||| ||||||||| |||| ||||||    
T  42205763 taaacacaaatgtatacaaatatgtttcattaactcttttggttcataaataaagttggtgtaatttagcaaagtg 42205838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 399
Target Start/End: Original strand, 2780284 - 2780354
Alignment:
Q  329 ttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatatgcccc 399  Q
    |||||||| |||| ||| |||||||| |||||||||||||||||||||  |||| ||||||||||||||||    
T  2780284 ttttaatctgatggctgtaatttattctcaccattctcacataagttaaccattctcatgtgatatgcccc 2780354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 41798789 - 41798857
Alignment:
Q  58 taaacacaaatgtatacaaata-gtttcactaattcttttgattcataaataaaattggtgtaaattag 125  Q
    |||||||||||||||||||||| |||||| ||||||||||  |||||||||||| ||| ||||||||||    
T  41798789 taaacacaaatgtatacaaatatgtttcattaattctttttgttcataaataaagttgctgtaaattag 41798857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 371
Target Start/End: Original strand, 40935868 - 40935940
Alignment:
Q  300 ttaagtggtgttttaatctaatccattgcttttaa-tccgatgactgcaatttattttcaccattctcacata 371  Q
    |||||| |||||||||||| | || ||| |||||| ||  ||| |||||||||||| ||||||||||||||||    
T  40935868 ttaagttgtgttttaatcttaacccttgtttttaaatcttatggctgcaatttattctcaccattctcacata 40935940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 42153185 - 42153141
Alignment:
Q  356 tcaccattctcacataagttacacattttcatgtgatatgccccc 400  Q
    |||||||||||||||||||| | |||| || ||||||||||||||    
T  42153185 tcaccattctcacataagttgcccattctcgtgtgatatgccccc 42153141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 398
Target Start/End: Complemental strand, 30322494 - 30322383
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttca 386  Q
    ||||||| || ||||||||||||||||||||| | ||||||||||||||  | || |||||||| ||| |||||||||||||||||| ||| |||| |||    
T  30322494 gcacatgagttacttaagtggtgttttaatctcacccattgcttttaatatgttggctgcaattcattctcaccattctcacataagatactcattctca 30322395  T
Q  387 tgtgatatgccc 398  Q
    ||||||||||||    
T  30322394 tgtgatatgccc 30322383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 373
Target Start/End: Original strand, 30322946 - 30323032
Alignment:
Q  287 gcacatgggtcacttaagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataag 373  Q
    ||||||| |||||||||||||||||||||||| | ||||  ||||||||| |||  |||||||| ||| ||||||||||||||||||    
T  30322946 gcacatgagtcacttaagtggtgttttaatctcacccatcacttttaatctgattgctgcaattcattctcaccattctcacataag 30323032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 12323969 - 12323911
Alignment:
Q  190 ccaaataaaaatatgcgcacttgataacttagaccttaatgtttttatgttggtctaag 248  Q
    ||||||||||| |||| |||||| ||||||| | |||||| |||||| |||||||||||    
T  12323969 ccaaataaaaaaatgcacacttgttaacttaaatcttaatatttttaggttggtctaag 12323911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 27902007 - 27902047
Alignment:
Q  360 cattctcacataagttacacattttcatgtgatatgccccc 400  Q
    |||||||||||||| ||| |||| |||||||||||||||||    
T  27902007 cattctcacataagatacccattctcatgtgatatgccccc 27902047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 35117832 - 35117792
Alignment:
Q  360 cattctcacataagttacacattttcatgtgatatgccccc 400  Q
    |||||||||||||| ||| |||| |||||||||||||||||    
T  35117832 cattctcacataagatactcattctcatgtgatatgccccc 35117792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 39985 - 40040
Alignment:
Q  192 aaataaaaatatgcgcacttgataacttagaccttaatgtttttatgttggtctaag 248  Q
    |||| ||||| ||| |||||| ||||||||||||||||||||||| |||||||||||    
T  39985 aaatcaaaatgtgcacacttgctaacttagaccttaatgttttta-gttggtctaag 40040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 400
Target Start/End: Complemental strand, 1180 - 1082
Alignment:
Q  302 aagtggtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatatgccccc 400  Q
    |||| |||||||||||| | || ||||||| ||||  ||| ||| |||||||| | | |||||||||||||| ||   ||| |||||||||||||||||    
T  1180 aagttgtgttttaatctcagcccttgctttaaatcttatggctgtaatttattcttatcattctcacataagatatctattctcatgtgatatgccccc 1082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 1738 - 1810
Alignment:
Q  328 cttttaatccgatgactgcaatttattttcaccattctcacataagttacacattttcatgtgatatgccccc 400  Q
    |||| |||| |||| ||| |||||||| | | |||||||||||||| ||  |||| |||||||||||||||||    
T  1738 ctttaaatctgatggctgtaatttattcttatcattctcacataagatatccattgtcatgtgatatgccccc 1810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 4698 - 4758
Alignment:
Q  307 gtgttttaatctaatccattgcttttaatccgatgactgcaatttattttcaccattctca 367  Q
    |||||||||||| |||| ||||||||||||  ||| || ||||| ||| ||||||||||||    
T  4698 gtgttttaatcttatcccttgcttttaatctaatggctacaattcattctcaccattctca 4758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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