View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2327_low_11 (Length: 443)

Name: NF2327_low_11
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2327_low_11
NF2327_low_11
[»] chr6 (3 HSPs)
chr6 (16-426)||(888053-888463)
chr6 (290-401)||(496068-496177)
chr6 (16-140)||(1002916-1003034)
[»] scaffold0117 (1 HSPs)
scaffold0117 (158-396)||(16373-16616)
[»] chr4 (1 HSPs)
chr4 (167-282)||(48301277-48301392)
[»] chr1 (2 HSPs)
chr1 (194-299)||(38192344-38192449)
chr1 (231-282)||(12572197-12572248)
[»] chr2 (3 HSPs)
chr2 (231-282)||(20019947-20019998)
chr2 (231-282)||(20000779-20000830)
chr2 (231-282)||(20029944-20029995)


Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 888053 - 888463
Alignment:
Q  16 atgaatcatcaaaaggaatcaagattcaaaatgagactcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  888053 atgaatcatcaaaaggaatcaagattcaaaatgagactcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatc 888152  T
Q  116 aagatatgacacgcatatattgtgagaagatactccaaatttatgttacgactatcttaactaattttctctgtgcattctgcttatagttatagctaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  888153 aagatatgacacgcatatattgtgagaagatactccaaatttatgttacgactatcttaactaattttctctgtgcattctgcttatagttatagctaat 888252  T
Q  216 aagctctaatttctgttgatttttctttctaacagcaaattcaaaacaatcctatgctaccacattgcattacaaatacgcaggcgcaggaatttttctg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  888253 aagctctaatttctgttgatttttctttctaacagcaaattcaaaacaatcccatgctaccacattgcattacaaatacgcaggcgcaggaatttttctg 888352  T
Q  316 acatgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatcgtgttacgactcgc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  888353 acatgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatatacatattactgcatcgtgttacgactcgc 888452  T
Q  416 atatatcgtga 426  Q
    |||||||||||    
T  888453 atatatcgtga 888463  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 401
Target Start/End: Original strand, 496068 - 496177
Alignment:
Q  290 aatacgcaggcgcaggaatttttctgacatgaaccaatttgtgacagtcctttcttgtaccatgatcatcaaatgtggcaaaatcaggtagtgatataca 389  Q
    |||||||| | ||| || |||||||| |  ||||| |||||||||||||||||| ||||| ||||||| || ||||||||||||||| |||||  |||||    
T  496068 aatacgcaagtgcaagattttttctgccgcgaaccgatttgtgacagtcctttcgtgtactatgatcaccacatgtggcaaaatcagttagtg--ataca 496165  T
Q  390 tattactgcatc 401  Q
    ||||||||||||    
T  496166 tattactgcatc 496177  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 1003034 - 1002916
Alignment:
Q  16 atgaatcatcaaaaggaatcaagattcaaaatgagactcgtatccaaaataacataaccatttgatttacaatgtgtgcatcgattttggatatcgaatc 115  Q
    |||| |||| |||||||||||||||||||||||| | || ||||    |||||| |||||||| ||||| |||||||  |||||||||| ||||||||||    
T  1003034 atgattcattaaaaggaatcaagattcaaaatgatattcatatc----ataacaaaaccatttcatttaaaatgtgt--atcgattttgaatatcgaatc 1002941  T
Q  116 aagatatgacacgcatatattgtga 140  Q
    ||| || ||| | ||||||| ||||    
T  1002940 aagttacgactcacatatatcgtga 1002916  T

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Target: scaffold0117 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 158 - 396
Target Start/End: Complemental strand, 16616 - 16373
Alignment:
Q  158 atgttacgactatcttaactaattttctct--gtgcattctgcttatagttatagctaataagctctaatttctgttgatttttctttctaacagcaaat 255  Q
    |||||| ||||||||||| ||| |||||||  ||||||||||||||||||||||||||||||| |||  ||| |||||||||||||||||||||||||||    
T  16616 atgttatgactatcttaagtaactttctctatgtgcattctgcttatagttatagctaataagttctgttttgtgttgatttttctttctaacagcaaat 16517  T
Q  256 tcaaaacaatcctatgctaccaca---ttgcattacaaatacgcaggcgcaggaatttttctgacatgaaccaatttgtgacagtcctttcttgtaccat 352  Q
    || |||||||||||||||||||||   |||||||||||| | |||| | |  || | |||||| ||||||||||||||||||||||||||||||||||||    
T  16516 tccaaacaatcctatgctaccacaatattgcattacaaacatgcagccaccagattatttctgccatgaaccaatttgtgacagtcctttcttgtaccat 16417  T
Q  353 gatcatcaaatgtggcaaaatcaggtagtgatatacatattact 396  Q
    |||||||| |||||||||||||||||||| ||||||||||||||    
T  16416 gatcatcacatgtggcaaaatcaggtagtaatatacatattact 16373  T

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Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 48301392 - 48301277
Alignment:
Q  167 ctatcttaactaattttctctgtgcattctgcttatagttatagctaataagctctaatttctgttgatttttctttctaacagcaaattcaaaacaatc 266  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||| ||| | || ||||||||||||| || |||| || | ||||||    
T  48301392 ctatcttaactaattttctctgcgcagtctgcttatagtcatagctaatatgctctattttatttttatttttctttctagcaacaaactccatacaatc 48301293  T
Q  267 ctatgctaccacattg 282  Q
    ||||||||||||||||    
T  48301292 ctatgctaccacattg 48301277  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 38192449 - 38192344
Alignment:
Q  194 tctgcttatagttatagctaataagctctaatttctgttgatttttctttctaacagcaaattcaaaacaatcctatgctaccacattgcattacaaata 293  Q
    |||| |||||||||||||| |||  ||||| ||| || ||||||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||| ||    
T  38192449 tctgattatagttatagctgatagactctattttatgctgatttttctttctaacagaaaattccaaataatcctatgctaccacattgcactacaacta 38192350  T
Q  294 cgcagg 299  Q
     |||||    
T  38192349 tgcagg 38192344  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 12572197 - 12572248
Alignment:
Q  231 ttgatttttctttctaacagcaaattcaaaacaatcctatgctaccacattg 282  Q
    ||||||||||| |||||||||||| || |||||| |||||| ||||||||||    
T  12572197 ttgatttttctctctaacagcaaactccaaacaaacctatgttaccacattg 12572248  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 20019998 - 20019947
Alignment:
Q  231 ttgatttttctttctaacagcaaattcaaaacaatcctatgctaccacattg 282  Q
    ||||||||||| |||||||||||| || |||||| |||||||||||||||||    
T  20019998 ttgatttttctctctaacagcaaactccaaacaaccctatgctaccacattg 20019947  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 20000830 - 20000779
Alignment:
Q  231 ttgatttttctttctaacagcaaattcaaaacaatcctatgctaccacattg 282  Q
    ||||||||||| |||| ||||||| || |||||| |||||||||||||||||    
T  20000830 ttgatttttctctctagcagcaaactccaaacaaacctatgctaccacattg 20000779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 20029995 - 20029944
Alignment:
Q  231 ttgatttttctttctaacagcaaattcaaaacaatcctatgctaccacattg 282  Q
    |||||||||||||||| ||||||| || |||||| |||||| ||||||||||    
T  20029995 ttgatttttctttctagcagcaaactccaaacaaacctatgataccacattg 20029944  T

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